Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2161056..2161327 | Replicon | chromosome |
| Accession | NZ_CP101920 | ||
| Organism | Escherichia coli strain QA-1986 630 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2161186..2161289 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2161056..2161327 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP447_RS10235 | 2157611..2158273 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NP447_RS10240 | 2158297..2158953 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NP447_RS10245 | 2159055..2159285 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NP447_RS10250 | 2159424..2159798 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NP447_RS10255 | 2159802..2160674 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NP447_RS10260 | 2160687..2161028 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2161056..2161327 | - | 272 | - | - | Antitoxin |
| - | 2161186..2161289 | + | 104 | - | - | Toxin |
| NP447_RS10265 | 2161424..2162080 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| NP447_RS10270 | 2162081..2162272 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NP447_RS10275 | 2162377..2162613 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NP447_RS10280 | 2162731..2164170 | - | 1440 | WP_024226338.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252933 NZ_CP101920:2161186-2161289 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT252933 NZ_CP101920:c2161327-2161056 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
