Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1904882..1905027 | Replicon | chromosome |
| Accession | NZ_CP101877 | ||
| Organism | Klebsiella pneumoniae strain KPA1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1904918..1905020 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1904882..1905027 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NNX43_RS09250 | 1900012..1902072 | + | 2061 | WP_094083900.1 | oligopeptidase B | - |
| NNX43_RS09255 | 1902076..1902735 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NNX43_RS09260 | 1902814..1903044 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NNX43_RS09265 | 1903157..1903531 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NNX43_RS09270 | 1903535..1904404 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| NNX43_RS09275 | 1904421..1904759 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1904882..1905027 | - | 146 | - | - | Antitoxin |
| - | 1904918..1905020 | + | 103 | - | - | Toxin |
| NNX43_RS09280 | 1905396..1905539 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NNX43_RS09285 | 1905644..1906612 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NNX43_RS09290 | 1906769..1907422 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| NNX43_RS09295 | 1907419..1907610 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NNX43_RS09300 | 1907708..1907947 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NNX43_RS09305 | 1908063..1909496 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252834 NZ_CP101877:1904918-1905020 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT252834 NZ_CP101877:c1905027-1904882 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
