Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011042..2011313 | Replicon | chromosome |
| Accession | NZ_CP101866 | ||
| Organism | Escherichia coli strain LP5-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011172..2011275 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011042..2011313 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NPX81_RS09705 | 2007597..2008259 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NPX81_RS09710 | 2008283..2008939 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NPX81_RS09715 | 2009041..2009271 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NPX81_RS09720 | 2009410..2009784 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NPX81_RS09725 | 2009788..2010660 | + | 873 | WP_040062819.1 | copper homeostasis membrane protein CopD | - |
| NPX81_RS09730 | 2010673..2011014 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2011042..2011313 | - | 272 | - | - | Antitoxin |
| - | 2011172..2011275 | + | 104 | - | - | Toxin |
| NPX81_RS09735 | 2011410..2012066 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| NPX81_RS09740 | 2012067..2012258 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NPX81_RS09745 | 2012363..2012599 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NPX81_RS09750 | 2012717..2014156 | - | 1440 | WP_180513063.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252809 NZ_CP101866:2011172-2011275 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT252809 NZ_CP101866:c2011313-2011042 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
