Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2746372..2746928 Replicon chromosome
Accession NZ_CP101847
Organism Xanthomonas oryzae pv. oryzae strain YNCX

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag NO935_RS12815 Protein ID WP_229001948.1
Coordinates 2746372..2746623 (-) Length 84 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A854CIX2
Locus tag NO935_RS12820 Protein ID WP_011408759.1
Coordinates 2746650..2746928 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NO935_RS12765 (NO935_12765) 2742478..2742794 - 317 Protein_2454 ATP-dependent DNA ligase -
NO935_RS12770 (NO935_12770) 2743076..2743252 - 177 Protein_2455 DUF3606 domain-containing protein -
NO935_RS12775 (NO935_12775) 2743474..2743875 + 402 WP_011259345.1 H-NS family nucleoid-associated regulatory protein -
NO935_RS12785 (NO935_12785) 2744818..2744819 - 2 WP_094187731.1 IS5 family transposase -
NO935_RS12790 (NO935_12790) 2745158..2745286 - 129 WP_012444694.1 hypothetical protein -
NO935_RS12795 (NO935_12795) 2745255..2745374 - 120 Protein_2459 IS3 family transposase -
NO935_RS12800 (NO935_12800) 2745591..2745845 - 255 WP_223293127.1 hypothetical protein -
NO935_RS12805 (NO935_12805) 2745914..2746048 - 135 WP_011051575.1 hypothetical protein -
NO935_RS12810 (NO935_12810) 2746041..2746295 - 255 WP_198912806.1 hypothetical protein -
NO935_RS12815 (NO935_12815) 2746372..2746623 - 252 WP_229001948.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NO935_RS12820 (NO935_12820) 2746650..2746928 - 279 WP_011408759.1 CopG family ribbon-helix-helix protein Antitoxin
NO935_RS12825 (NO935_12825) 2747124..2747510 - 387 WP_205421001.1 hypothetical protein -
NO935_RS12830 (NO935_12830) 2748162..2749130 - 969 WP_164994120.1 IS5-like element ISXo1 family transposase -
NO935_RS12835 (NO935_12835) 2749534..2750725 - 1192 Protein_2467 IS256 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 2744291..2752271 7980


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-81)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 84 a.a.        Molecular weight: 9603.92 Da        Isoelectric Point: 9.9718

>T252766 WP_229001948.1 NZ_CP101847:c2746623-2746372 [Xanthomonas oryzae pv. oryzae]
MLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDGDTVTILAVRHQKE
AGY

Download         Length: 252 bp

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10826.11 Da        Isoelectric Point: 4.9736

>AT252766 WP_011408759.1 NZ_CP101847:c2746928-2746650 [Xanthomonas oryzae pv. oryzae]
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A854CIX2

References