Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
| Location | 2746372..2746928 | Replicon | chromosome |
| Accession | NZ_CP101847 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain YNCX | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | NO935_RS12815 | Protein ID | WP_229001948.1 |
| Coordinates | 2746372..2746623 (-) | Length | 84 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A854CIX2 |
| Locus tag | NO935_RS12820 | Protein ID | WP_011408759.1 |
| Coordinates | 2746650..2746928 (-) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NO935_RS12765 (NO935_12765) | 2742478..2742794 | - | 317 | Protein_2454 | ATP-dependent DNA ligase | - |
| NO935_RS12770 (NO935_12770) | 2743076..2743252 | - | 177 | Protein_2455 | DUF3606 domain-containing protein | - |
| NO935_RS12775 (NO935_12775) | 2743474..2743875 | + | 402 | WP_011259345.1 | H-NS family nucleoid-associated regulatory protein | - |
| NO935_RS12785 (NO935_12785) | 2744818..2744819 | - | 2 | WP_094187731.1 | IS5 family transposase | - |
| NO935_RS12790 (NO935_12790) | 2745158..2745286 | - | 129 | WP_012444694.1 | hypothetical protein | - |
| NO935_RS12795 (NO935_12795) | 2745255..2745374 | - | 120 | Protein_2459 | IS3 family transposase | - |
| NO935_RS12800 (NO935_12800) | 2745591..2745845 | - | 255 | WP_223293127.1 | hypothetical protein | - |
| NO935_RS12805 (NO935_12805) | 2745914..2746048 | - | 135 | WP_011051575.1 | hypothetical protein | - |
| NO935_RS12810 (NO935_12810) | 2746041..2746295 | - | 255 | WP_198912806.1 | hypothetical protein | - |
| NO935_RS12815 (NO935_12815) | 2746372..2746623 | - | 252 | WP_229001948.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| NO935_RS12820 (NO935_12820) | 2746650..2746928 | - | 279 | WP_011408759.1 | CopG family ribbon-helix-helix protein | Antitoxin |
| NO935_RS12825 (NO935_12825) | 2747124..2747510 | - | 387 | WP_205421001.1 | hypothetical protein | - |
| NO935_RS12830 (NO935_12830) | 2748162..2749130 | - | 969 | WP_164994120.1 | IS5-like element ISXo1 family transposase | - |
| NO935_RS12835 (NO935_12835) | 2749534..2750725 | - | 1192 | Protein_2467 | IS256 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | - | 2744291..2752271 | 7980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|