Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047396..2047544 | Replicon | chromosome |
| Accession | NC_015567 | ||
| Organism | Serratia plymuthica AS9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047440..2047536 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047396..2047544 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SERAS9_RS09525 | 2042615..2043040 | + | 426 | WP_013812462.1 | TraR/DksA C4-type zinc finger protein | - |
| SERAS9_RS09530 | 2043209..2044162 | + | 954 | WP_013812463.1 | prolyl aminopeptidase | - |
| SERAS9_RS09535 | 2044191..2044421 | - | 231 | WP_013812464.1 | DNA polymerase III subunit theta | - |
| SERAS9_RS09540 | 2044796..2045314 | + | 519 | WP_013815088.1 | non-heme ferritin | - |
| SERAS9_RS09545 | 2045619..2046002 | + | 384 | WP_013812465.1 | CopC domain-containing protein YobA | - |
| SERAS9_RS09550 | 2046006..2046887 | + | 882 | WP_013812466.1 | copper homeostasis membrane protein CopD | - |
| SERAS9_RS09555 | 2046957..2047298 | + | 342 | WP_013812467.1 | YebY family protein | - |
| - | 2047396..2047544 | - | 149 | - | - | Antitoxin |
| - | 2047440..2047536 | + | 97 | - | - | Toxin |
| SERAS9_RS09560 | 2048114..2048818 | + | 705 | WP_013812468.1 | hypothetical protein | - |
| SERAS9_RS09565 | 2049092..2049832 | - | 741 | WP_013812470.1 | alpha/beta hydrolase | - |
| SERAS9_RS09570 | 2050258..2050611 | + | 354 | WP_013812471.1 | hypothetical protein | - |
| SERAS9_RS09575 | 2050885..2051424 | + | 540 | WP_013812472.1 | cysteine hydrolase | - |
| SERAS9_RS09580 | 2051540..2051890 | + | 351 | WP_041416043.1 | DUF4377 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T25273 NC_015567:2047440-2047536 [Serratia plymuthica AS9]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT25273 NC_015567:c2047544-2047396 [Serratia plymuthica AS9]
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
