Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955682..1955827 | Replicon | chromosome |
| Accession | NZ_CP101790 | ||
| Organism | Klebsiella pneumoniae strain hvKP859 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955718..1955820 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955682..1955827 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NPJ86_RS09435 (NPJ86_09435) | 1950812..1952872 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NPJ86_RS09440 (NPJ86_09440) | 1952876..1953535 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| NPJ86_RS09445 (NPJ86_09445) | 1953614..1953844 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NPJ86_RS09450 (NPJ86_09450) | 1953957..1954331 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NPJ86_RS09455 (NPJ86_09455) | 1954335..1955204 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NPJ86_RS09460 (NPJ86_09460) | 1955221..1955559 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1955682..1955827 | - | 146 | - | - | Antitoxin |
| - | 1955718..1955820 | + | 103 | - | - | Toxin |
| NPJ86_RS09465 (NPJ86_09465) | 1956196..1956339 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NPJ86_RS09470 (NPJ86_09470) | 1956444..1957412 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NPJ86_RS09475 (NPJ86_09475) | 1957569..1958222 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| NPJ86_RS09480 (NPJ86_09480) | 1958219..1958410 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NPJ86_RS09485 (NPJ86_09485) | 1958508..1958747 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NPJ86_RS09490 (NPJ86_09490) | 1958863..1960296 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252721 NZ_CP101790:1955718-1955820 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT252721 NZ_CP101790:c1955827-1955682 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
