Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014251..2014396 | Replicon | chromosome |
| Accession | NZ_CP101784 | ||
| Organism | Klebsiella pneumoniae strain hvKP841 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014287..2014389 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014251..2014396 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NPJ85_RS09885 (NPJ85_09885) | 2009381..2011441 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NPJ85_RS09890 (NPJ85_09890) | 2011445..2012104 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NPJ85_RS09895 (NPJ85_09895) | 2012183..2012413 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NPJ85_RS09900 (NPJ85_09900) | 2012526..2012900 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NPJ85_RS09905 (NPJ85_09905) | 2012904..2013773 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NPJ85_RS09910 (NPJ85_09910) | 2013790..2014128 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2014251..2014396 | - | 146 | - | - | Antitoxin |
| - | 2014287..2014389 | + | 103 | - | - | Toxin |
| NPJ85_RS09915 (NPJ85_09915) | 2014764..2014907 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NPJ85_RS09920 (NPJ85_09920) | 2015012..2015980 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NPJ85_RS09925 (NPJ85_09925) | 2016137..2016790 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NPJ85_RS09930 (NPJ85_09930) | 2016787..2016978 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NPJ85_RS09935 (NPJ85_09935) | 2017076..2017315 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NPJ85_RS09940 (NPJ85_09940) | 2017431..2018864 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252696 NZ_CP101784:2014287-2014389 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT252696 NZ_CP101784:c2014396-2014251 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
