Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1991228..1991373 | Replicon | chromosome |
| Accession | NZ_CP101770 | ||
| Organism | Klebsiella pneumoniae strain hvKP323 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1991264..1991366 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1991228..1991373 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NO368_RS09765 (NO368_09765) | 1986358..1988418 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NO368_RS09770 (NO368_09770) | 1988422..1989081 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NO368_RS09775 (NO368_09775) | 1989160..1989390 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NO368_RS09780 (NO368_09780) | 1989503..1989877 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NO368_RS09785 (NO368_09785) | 1989881..1990750 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NO368_RS09790 (NO368_09790) | 1990767..1991105 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1991228..1991373 | - | 146 | - | - | Antitoxin |
| - | 1991264..1991366 | + | 103 | - | - | Toxin |
| NO368_RS09795 (NO368_09795) | 1991741..1991884 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NO368_RS09800 (NO368_09800) | 1991989..1992957 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NO368_RS09805 (NO368_09805) | 1993114..1993767 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NO368_RS09810 (NO368_09810) | 1993764..1993955 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NO368_RS09815 (NO368_09815) | 1994053..1994292 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NO368_RS09820 (NO368_09820) | 1994408..1995841 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252645 NZ_CP101770:1991264-1991366 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT252645 NZ_CP101770:c1991373-1991228 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
