Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008471..2008616 | Replicon | chromosome |
| Accession | NZ_CP101764 | ||
| Organism | Klebsiella pneumoniae strain hvKP319 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008507..2008609 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008471..2008616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NPJ83_RS09845 (NPJ83_09845) | 2003601..2005661 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NPJ83_RS09850 (NPJ83_09850) | 2005665..2006324 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NPJ83_RS09855 (NPJ83_09855) | 2006403..2006633 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NPJ83_RS09860 (NPJ83_09860) | 2006746..2007120 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NPJ83_RS09865 (NPJ83_09865) | 2007124..2007993 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| NPJ83_RS09870 (NPJ83_09870) | 2008010..2008348 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2008471..2008616 | - | 146 | - | - | Antitoxin |
| - | 2008507..2008609 | + | 103 | - | - | Toxin |
| NPJ83_RS09875 (NPJ83_09875) | 2008984..2009127 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NPJ83_RS09880 (NPJ83_09880) | 2009232..2010200 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NPJ83_RS09885 (NPJ83_09885) | 2010357..2011010 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NPJ83_RS09890 (NPJ83_09890) | 2011007..2011198 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NPJ83_RS09895 (NPJ83_09895) | 2011296..2011535 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NPJ83_RS09900 (NPJ83_09900) | 2011651..2013084 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T252613 NZ_CP101764:2008507-2008609 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT252613 NZ_CP101764:c2008616-2008471 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
