Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 4434542..4435095 Replicon chromosome
Accession NZ_CP101752
Organism Pseudomonas citronellolis strain C12

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NOX82_RS19465 Protein ID WP_256511719.1
Coordinates 4434542..4434817 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NOX82_RS19470 Protein ID WP_256511720.1
Coordinates 4434817..4435095 (-) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NOX82_RS19435 (NOX82_19435) 4429596..4430510 - 915 WP_256511715.1 alpha/beta hydrolase -
NOX82_RS19440 (NOX82_19440) 4430520..4431335 - 816 WP_256511716.1 SDR family NAD(P)-dependent oxidoreductase -
NOX82_RS19445 (NOX82_19445) 4431535..4432584 + 1050 WP_256511717.1 Rieske 2Fe-2S domain-containing protein -
NOX82_RS19450 (NOX82_19450) 4432687..4433817 + 1131 WP_116425004.1 helix-turn-helix transcriptional regulator -
NOX82_RS19455 (NOX82_19455) 4433881..4434066 + 186 WP_143096607.1 hypothetical protein -
NOX82_RS19460 (NOX82_19460) 4434068..4434493 - 426 WP_043315128.1 VOC family protein -
NOX82_RS19465 (NOX82_19465) 4434542..4434817 - 276 WP_256511719.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NOX82_RS19470 (NOX82_19470) 4434817..4435095 - 279 WP_256511720.1 ribbon-helix-helix domain-containing protein Antitoxin
NOX82_RS19475 (NOX82_19475) 4435394..4435552 + 159 WP_089390468.1 hypothetical protein -
NOX82_RS19480 (NOX82_19480) 4435561..4436184 + 624 WP_116425073.1 XRE family transcriptional regulator -
NOX82_RS19485 (NOX82_19485) 4436253..4436756 - 504 WP_256511721.1 hypothetical protein -
NOX82_RS19490 (NOX82_19490) 4437043..4437405 + 363 Protein_3845 ATP-binding protein -
NOX82_RS19495 (NOX82_19495) 4437496..4437939 + 444 WP_256515378.1 NUDIX domain-containing protein -
NOX82_RS19500 (NOX82_19500) 4438185..4439321 + 1137 WP_249917019.1 FMNH2-dependent alkanesulfonate monooxygenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(10-47)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10556.17 Da        Isoelectric Point: 10.5619

>T252602 WP_256511719.1 NZ_CP101752:c4434817-4434542 [Pseudomonas citronellolis]
MALQWTSKALSDLARLHEFLAPVNRSAAARTVQQLVAAPAVLLTNPRLGERLDEFAPRDVRRLLVGHYEMRYEIRGSDIH
LLRVWHTREER

Download         Length: 276 bp

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10361.61 Da        Isoelectric Point: 4.6787

>AT252602 WP_256511720.1 NZ_CP101752:c4435095-4434817 [Pseudomonas citronellolis]
MATTCKTRSVTAHVPVELAERVDEIAERLERSKNWIVKQALSAWLDQEDERSRLTREALADVDAGRVIDHQSVQAWADSL
DSDTPLPLPVPR

Download         Length: 279 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References