252598

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 1492879..1493487 Replicon chromosome
Accession NZ_CP101752
Organism Pseudomonas citronellolis strain C12

Toxin (Protein)


Gene name PfiT Uniprot ID -
Locus tag NOX82_RS06865 Protein ID WP_253391583.1
Coordinates 1492879..1493226 (-) Length 116 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID -
Locus tag NOX82_RS06870 Protein ID WP_253391584.1
Coordinates 1493236..1493487 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NOX82_RS06835 (NOX82_06835) 1488655..1489512 + 858 WP_256514519.1 ORF6N domain-containing protein -
NOX82_RS06840 (NOX82_06840) 1489524..1489925 + 402 WP_256514520.1 hypothetical protein -
NOX82_RS06845 (NOX82_06845) 1489944..1490330 + 387 WP_256514521.1 DUF2513 domain-containing protein -
NOX82_RS06850 (NOX82_06850) 1490347..1490652 - 306 Protein_1348 Presumed portal vertex protein -
NOX82_RS06855 (NOX82_06855) 1490632..1491429 + 798 Protein_1349 contractile injection system protein, VgrG/Pvc8 family -
NOX82_RS06860 (NOX82_06860) 1491469..1492323 - 855 WP_256514522.1 serine protease -
NOX82_RS06865 (NOX82_06865) 1492879..1493226 - 348 WP_253391583.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NOX82_RS06870 (NOX82_06870) 1493236..1493487 - 252 WP_253391584.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
NOX82_RS06875 (NOX82_06875) 1493946..1495361 + 1416 WP_256514526.1 amino acid permease -
NOX82_RS06880 (NOX82_06880) 1495487..1496023 + 537 WP_061560836.1 2,4'-dihydroxyacetophenone dioxygenase family protein -
NOX82_RS06885 (NOX82_06885) 1496080..1496985 + 906 WP_043272449.1 LysR family transcriptional regulator -
NOX82_RS06890 (NOX82_06890) 1497048..1498289 + 1242 WP_256514528.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-100)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 12977.83 Da        Isoelectric Point: 4.6337

>T252598 WP_253391583.1 NZ_CP101752:c1493226-1492879 [Pseudomonas citronellolis]
MSKLVIRLTDTAEQSIEDQVHHLVQFQGSQAALQSVLSLLDEIEEKISLTPQGYPISQQASLLGVLNYRELNTGPYRVFY
ELHEEQGEVAVILVLRQKQSVEQQLIRYCLVGPIG

Download         Length: 348 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9486.80 Da        Isoelectric Point: 8.4753

>AT252598 WP_253391584.1 NZ_CP101752:c1493487-1493236 [Pseudomonas citronellolis]
MRVETISYLKRHAADLDLSEPMVVTQNGVPAYVVESYAERKQRDEAIALVKLLAIGSRQYAEGKHRSVDDLKARLSRRFD
QPE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References