Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | phd-doc/HTH_IclR(antitoxin) |
Location | 821392..823054 | Replicon | chromosome |
Accession | NZ_CP101752 | ||
Organism | Pseudomonas citronellolis strain C12 |
Toxin (Protein)
Gene name | doc | Uniprot ID | - |
Locus tag | NOX82_RS03790 | Protein ID | WP_256514149.1 |
Coordinates | 822218..823054 (-) | Length | 279 a.a. |
Antitoxin (Protein)
Gene name | phd | Uniprot ID | - |
Locus tag | NOX82_RS03785 | Protein ID | WP_058071792.1 |
Coordinates | 821392..822213 (-) | Length | 274 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NOX82_RS03765 (NOX82_03765) | 816611..818098 | - | 1488 | WP_256514144.1 | aldehyde dehydrogenase | - |
NOX82_RS03770 (NOX82_03770) | 818109..818912 | - | 804 | WP_256514145.1 | aspartate dehydrogenase | - |
NOX82_RS03775 (NOX82_03775) | 818923..820605 | - | 1683 | WP_256514146.1 | thiamine pyrophosphate-binding protein | - |
NOX82_RS03780 (NOX82_03780) | 820598..821395 | - | 798 | WP_256514147.1 | SDR family oxidoreductase | - |
NOX82_RS03785 (NOX82_03785) | 821392..822213 | - | 822 | WP_058071792.1 | IclR family transcriptional regulator | Antitoxin |
NOX82_RS03790 (NOX82_03790) | 822218..823054 | - | 837 | WP_256514149.1 | alpha/beta fold hydrolase | Toxin |
NOX82_RS03795 (NOX82_03795) | 823074..823607 | - | 534 | WP_116426055.1 | cupin domain-containing protein | - |
NOX82_RS03800 (NOX82_03800) | 823619..824380 | - | 762 | WP_256514150.1 | SDR family oxidoreductase | - |
NOX82_RS03805 (NOX82_03805) | 824391..825164 | - | 774 | WP_043315312.1 | ABC transporter permease | - |
NOX82_RS03810 (NOX82_03810) | 825181..826179 | - | 999 | WP_074986021.1 | ABC transporter substrate-binding protein | - |
NOX82_RS03815 (NOX82_03815) | 826200..827042 | - | 843 | WP_116426052.1 | ABC transporter ATP-binding protein | - |
NOX82_RS03820 (NOX82_03820) | 827487..827639 | - | 153 | WP_256514152.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 279 a.a. Molecular weight: 29482.01 Da Isoelectric Point: 7.2820
>T252596 WP_256514149.1 NZ_CP101752:c823054-822218 [Pseudomonas citronellolis]
MSTAAAWQADLERDFPQRLVRRGEVVSAWREAGAADAPALVLLHGIGSGAASWLLLAQCLKARARLIAWDAPGYGESTPL
AEAAPRAEAYMQRLRELLDALDVQRCVLLGHSLGALTALALANAEPRRVARLLLLSPARGYGARPAEGEAVRSRRLAGLA
SEGIAGLAERRAPAMLSASPGAEALAWVRWNMARLKPHGYRQAVELLCGDDLLRLGRPPVPVEVLCGSEDGITPPAACRE
VAETLAAPFQLVPGAGHASPIECPEALAGHLVRFLDKD
MSTAAAWQADLERDFPQRLVRRGEVVSAWREAGAADAPALVLLHGIGSGAASWLLLAQCLKARARLIAWDAPGYGESTPL
AEAAPRAEAYMQRLRELLDALDVQRCVLLGHSLGALTALALANAEPRRVARLLLLSPARGYGARPAEGEAVRSRRLAGLA
SEGIAGLAERRAPAMLSASPGAEALAWVRWNMARLKPHGYRQAVELLCGDDLLRLGRPPVPVEVLCGSEDGITPPAACRE
VAETLAAPFQLVPGAGHASPIECPEALAGHLVRFLDKD
Download Length: 837 bp
Antitoxin
Download Length: 274 a.a. Molecular weight: 30315.89 Da Isoelectric Point: 6.7546
>AT252596 WP_058071792.1 NZ_CP101752:c822213-821392 [Pseudomonas citronellolis]
MSTDTLTENQERYMVPGLERGLTLLGEFTRHDRTLTAPELARRLQLPRTTIFRLLATLEALGFVTRSGNEYRLGMAVLRL
GFEYLASLELTELGQPILRRLCDAIGYSCNLVVRDGRNIVYVAKISPPSILTSAVNVGTRLPAHATVLGRILLEDLDLAA
LRELYPEKQLERFSEGTPRSTEELFDLVQNDRLRGYALSEGFFEASISTVAAPVRDHTGRVCAAMGVTIPATRIAEHLLE
PLVRQVRNSAEELSGLLGHMPNPNVLSLQRVHS
MSTDTLTENQERYMVPGLERGLTLLGEFTRHDRTLTAPELARRLQLPRTTIFRLLATLEALGFVTRSGNEYRLGMAVLRL
GFEYLASLELTELGQPILRRLCDAIGYSCNLVVRDGRNIVYVAKISPPSILTSAVNVGTRLPAHATVLGRILLEDLDLAA
LRELYPEKQLERFSEGTPRSTEELFDLVQNDRLRGYALSEGFFEASISTVAAPVRDHTGRVCAAMGVTIPATRIAEHLLE
PLVRQVRNSAEELSGLLGHMPNPNVLSLQRVHS
Download Length: 822 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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