Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
Location | 2856747..2857303 | Replicon | chromosome |
Accession | NZ_CP101702 | ||
Organism | Xanthomonas oryzae pv. oryzae strain CIX4509 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | NO460_RS13350 | Protein ID | WP_229001948.1 |
Coordinates | 2856747..2856998 (-) | Length | 84 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A854CIX2 |
Locus tag | NO460_RS13355 | Protein ID | WP_011408759.1 |
Coordinates | 2857025..2857303 (-) | Length | 93 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NO460_RS13300 (NO460_13310) | 2852853..2853169 | - | 317 | Protein_2561 | ATP-dependent DNA ligase | - |
NO460_RS13305 (NO460_13315) | 2853451..2853627 | - | 177 | Protein_2562 | DUF3606 domain-containing protein | - |
NO460_RS13310 (NO460_13320) | 2853849..2854250 | + | 402 | WP_011259345.1 | H-NS family nucleoid-associated regulatory protein | - |
NO460_RS13320 (NO460_13330) | 2855193..2855194 | - | 2 | WP_094187731.1 | IS5 family transposase | - |
NO460_RS13325 (NO460_13335) | 2855533..2855661 | - | 129 | WP_012444694.1 | hypothetical protein | - |
NO460_RS13330 (NO460_13340) | 2855630..2855749 | - | 120 | Protein_2566 | IS3 family transposase | - |
NO460_RS13335 (NO460_13345) | 2855966..2856220 | - | 255 | WP_223293127.1 | hypothetical protein | - |
NO460_RS13340 (NO460_13350) | 2856289..2856423 | - | 135 | WP_011051575.1 | hypothetical protein | - |
NO460_RS13345 (NO460_13355) | 2856416..2856670 | - | 255 | WP_198912806.1 | hypothetical protein | - |
NO460_RS13350 (NO460_13360) | 2856747..2856998 | - | 252 | WP_229001948.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
NO460_RS13355 (NO460_13365) | 2857025..2857303 | - | 279 | WP_011408759.1 | CopG family ribbon-helix-helix protein | Antitoxin |
NO460_RS13360 (NO460_13370) | 2857499..2857843 | - | 345 | WP_198912817.1 | hypothetical protein | - |
NO460_RS13365 (NO460_13375) | 2858749..2859933 | - | 1185 | WP_011408522.1 | IS256-like element IS1113 family transposase | - |
NO460_RS13370 (NO460_13380) | 2860514..2861479 | + | 966 | WP_109181928.1 | IS1595-like element ISXo5 family transposase | - |
NO460_RS13375 (NO460_13385) | 2861629..2862186 | + | 558 | WP_011259349.1 | DNA-3-methyladenine glycosylase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | IScluster/Tn | - | - | 2854666..2861479 | 6813 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|