Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /RES-TIGR02293 |
Location | 3573416..3574299 | Replicon | chromosome |
Accession | NZ_CP101700 | ||
Organism | Pseudomonas asiatica strain MD9 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | NOV18_RS16610 | Protein ID | WP_239688254.1 |
Coordinates | 3573416..3573802 (-) | Length | 129 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | F8G488 |
Locus tag | NOV18_RS16615 | Protein ID | WP_013973163.1 |
Coordinates | 3573850..3574299 (-) | Length | 150 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NOV18_RS16590 (NOV18_16590) | 3568582..3569646 | + | 1065 | WP_015270847.1 | TerC family protein | - |
NOV18_RS16595 (NOV18_16595) | 3569786..3571015 | - | 1230 | WP_054572083.1 | acyl-CoA dehydrogenase | - |
NOV18_RS16600 (NOV18_16600) | 3571156..3572082 | + | 927 | WP_015270849.1 | LysR family transcriptional regulator | - |
NOV18_RS16605 (NOV18_16605) | 3572254..3573408 | + | 1155 | WP_054572084.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
NOV18_RS16610 (NOV18_16610) | 3573416..3573802 | - | 387 | WP_239688254.1 | RES family NAD+ phosphorylase | Toxin |
NOV18_RS16615 (NOV18_16615) | 3573850..3574299 | - | 450 | WP_013973163.1 | DUF2384 domain-containing protein | Antitoxin |
NOV18_RS16620 (NOV18_16620) | 3574398..3575051 | - | 654 | WP_256381797.1 | oxygen-insensitive NAD(P)H nitroreductase | - |
NOV18_RS16625 (NOV18_16625) | 3575156..3576079 | + | 924 | WP_054572087.1 | LysR family transcriptional regulator | - |
NOV18_RS16630 (NOV18_16630) | 3576127..3576957 | + | 831 | WP_256381798.1 | AraC family transcriptional regulator | - |
NOV18_RS16635 (NOV18_16635) | 3577008..3577592 | + | 585 | WP_054572088.1 | LysE family translocator | - |
NOV18_RS16640 (NOV18_16640) | 3577732..3578931 | - | 1200 | WP_054572089.1 | sugar transporter | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 129 a.a. Molecular weight: 14242.25 Da Isoelectric Point: 5.0980
>T252509 WP_239688254.1 NZ_CP101700:c3573802-3573416 [Pseudomonas asiatica]
MRVSGRWHQAGRPVVYAATSPAGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSSQTELTRGLGNRF
LDECSALLLPVPSAIMPSTTNYLFNPRHLQANSARLEVEDFTPDSRLF
MRVSGRWHQAGRPVVYAATSPAGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSSQTELTRGLGNRF
LDECSALLLPVPSAIMPSTTNYLFNPRHLQANSARLEVEDFTPDSRLF
Download Length: 387 bp
Antitoxin
Download Length: 150 a.a. Molecular weight: 17004.59 Da Isoelectric Point: 6.3405
>AT252509 WP_013973163.1 NZ_CP101700:c3574299-3573850 [Pseudomonas asiatica]
MLAEVLRDNGYHEYRARLHALLEIPELASDFEIHTRITHGFAATWLVKLTELGVFTPVERDQIIPLRTLKTRIERDQPLT
VEESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGFGL
MLAEVLRDNGYHEYRARLHALLEIPELASDFEIHTRITHGFAATWLVKLTELGVFTPVERDQIIPLRTLKTRIERDQPLT
VEESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGFGL
Download Length: 450 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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