252419

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2422431..2422574 Replicon chromosome
Accession NZ_CP101647
Organism Salmonella enterica subsp. enterica serovar Kentucky strain KCID6

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2422469..2422572 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2422431..2422574 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NOQ94_RS11775 2418855..2419553 - 699 WP_000944282.1 exodeoxyribonuclease X -
NOQ94_RS11780 2419577..2420233 - 657 WP_000100249.1 carbon-nitrogen hydrolase family protein -
NOQ94_RS11785 2420341..2420571 - 231 WP_000856224.1 DNA polymerase III subunit theta -
NOQ94_RS11790 2420709..2421083 + 375 WP_023205606.1 CopC domain-containing protein YobA -
NOQ94_RS11795 2421084..2421959 + 876 WP_023223935.1 copper homeostasis membrane protein CopD -
NOQ94_RS11800 2421976..2422329 + 354 WP_000722368.1 YebY family protein -
- 2422431..2422574 - 144 - - Antitoxin
- 2422469..2422572 + 104 - - Toxin
NOQ94_RS11805 2422703..2423050 - 348 Protein_2285 tyrosine-type recombinase/integrase -
NOQ94_RS11810 2423062..2423145 + 84 Protein_2286 phage tail protein -
NOQ94_RS11815 2423319..2425202 + 1884 WP_224157289.1 NEL-type E3 ubiquitin ligase domain-containing protein -
NOQ94_RS11820 2425344..2425872 + 529 Protein_2288 transposase -
NOQ94_RS11825 2426018..2426158 - 141 WP_031607419.1 hypothetical protein -
NOQ94_RS11830 2426324..2426592 - 269 Protein_2290 hypothetical protein -
NOQ94_RS11835 2426632..2426832 + 201 WP_023223931.1 hypothetical protein -
NOQ94_RS11840 2426961..2427380 + 420 WP_023205587.1 GNAT family N-acetyltransferase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 2425534..2425872 338


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T252419 NZ_CP101647:2422469-2422572 [Salmonella enterica subsp. enterica serovar Kentucky]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT252419 NZ_CP101647:c2422574-2422431 [Salmonella enterica subsp. enterica serovar Kentucky]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References