Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /Acetyltransf_4(toxin) |
| Location | 3378736..3380139 | Replicon | chromosome |
| Accession | NC_015556 | ||
| Organism | Pseudomonas fulva 12-X | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | F6A9B9 |
| Locus tag | PSEFU_RS15810 | Protein ID | WP_013792247.1 |
| Coordinates | 3379570..3380139 (-) | Length | 190 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | F6A9B8 |
| Locus tag | PSEFU_RS15805 | Protein ID | WP_013792246.1 |
| Coordinates | 3378736..3379566 (-) | Length | 277 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSEFU_RS15785 | 3374529..3376595 | - | 2067 | WP_013792242.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| PSEFU_RS15790 | 3376628..3377245 | - | 618 | WP_013792243.1 | glutathione S-transferase | - |
| PSEFU_RS15795 | 3377380..3377709 | - | 330 | WP_013792244.1 | AzlD domain-containing protein | - |
| PSEFU_RS15800 | 3377709..3378419 | - | 711 | WP_013792245.1 | AzlC family ABC transporter permease | - |
| PSEFU_RS15805 | 3378736..3379566 | - | 831 | WP_013792246.1 | AraC family transcriptional regulator | Antitoxin |
| PSEFU_RS15810 | 3379570..3380139 | - | 570 | WP_013792247.1 | GNAT family N-acetyltransferase | Toxin |
| PSEFU_RS15815 | 3380355..3383831 | + | 3477 | WP_013792248.1 | hybrid sensor histidine kinase/response regulator | - |
| PSEFU_RS15820 | 3383965..3384303 | + | 339 | WP_013792249.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 190 a.a. Molecular weight: 21627.96 Da Isoelectric Point: 8.4935
>T25237 WP_013792247.1 NC_015556:c3380139-3379570 [Pseudomonas fulva 12-X]
MFKPQLITLQRGALRIEPLLDGDIPALVSLAEANRDELLYMSGTQRLDWYRLALQEQREERALPFVIRLADQIVGTTRFA
DFMPTLPAVEIGWTWLDAAQHGTGLNNMIKYLMLRHAFESWQMVRVQLKTAASNQRSQRAIEKLGAVREGLLRNHRRLAD
GRLDDTVLYSITDQEWPVVKAGLEARFGV
MFKPQLITLQRGALRIEPLLDGDIPALVSLAEANRDELLYMSGTQRLDWYRLALQEQREERALPFVIRLADQIVGTTRFA
DFMPTLPAVEIGWTWLDAAQHGTGLNNMIKYLMLRHAFESWQMVRVQLKTAASNQRSQRAIEKLGAVREGLLRNHRRLAD
GRLDDTVLYSITDQEWPVVKAGLEARFGV
Download Length: 570 bp
>T25237 NC_015556:c3380139-3379570 [Pseudomonas fulva 12-X]
ATGTTCAAGCCGCAATTGATCACCCTGCAGCGCGGTGCCCTGCGCATCGAACCGTTGCTCGATGGCGATATTCCGGCGCT
GGTCAGCCTGGCCGAAGCCAATCGCGATGAGCTGCTCTACATGAGCGGCACCCAGCGCCTGGACTGGTACCGCCTGGCCC
TGCAGGAGCAGCGCGAAGAGCGCGCCTTGCCCTTCGTGATTCGCCTCGCCGACCAGATCGTCGGCACCACGCGCTTCGCC
GACTTCATGCCGACCCTGCCGGCGGTGGAAATCGGCTGGACCTGGCTGGACGCCGCCCAGCACGGCACCGGCCTGAACAA
CATGATCAAGTACCTGATGCTGCGCCACGCCTTCGAGAGCTGGCAGATGGTTCGCGTGCAACTGAAAACCGCCGCCAGCA
ACCAGCGCTCCCAGCGCGCCATCGAAAAGCTCGGCGCGGTTCGCGAGGGCCTGCTGCGCAATCATCGCCGCCTGGCCGAC
GGGCGCCTCGACGACACCGTGCTGTACAGCATCACCGATCAGGAATGGCCGGTGGTCAAGGCCGGGCTGGAGGCACGCTT
CGGCGTGTGA
ATGTTCAAGCCGCAATTGATCACCCTGCAGCGCGGTGCCCTGCGCATCGAACCGTTGCTCGATGGCGATATTCCGGCGCT
GGTCAGCCTGGCCGAAGCCAATCGCGATGAGCTGCTCTACATGAGCGGCACCCAGCGCCTGGACTGGTACCGCCTGGCCC
TGCAGGAGCAGCGCGAAGAGCGCGCCTTGCCCTTCGTGATTCGCCTCGCCGACCAGATCGTCGGCACCACGCGCTTCGCC
GACTTCATGCCGACCCTGCCGGCGGTGGAAATCGGCTGGACCTGGCTGGACGCCGCCCAGCACGGCACCGGCCTGAACAA
CATGATCAAGTACCTGATGCTGCGCCACGCCTTCGAGAGCTGGCAGATGGTTCGCGTGCAACTGAAAACCGCCGCCAGCA
ACCAGCGCTCCCAGCGCGCCATCGAAAAGCTCGGCGCGGTTCGCGAGGGCCTGCTGCGCAATCATCGCCGCCTGGCCGAC
GGGCGCCTCGACGACACCGTGCTGTACAGCATCACCGATCAGGAATGGCCGGTGGTCAAGGCCGGGCTGGAGGCACGCTT
CGGCGTGTGA
Antitoxin
Download Length: 277 a.a. Molecular weight: 30757.17 Da Isoelectric Point: 10.0515
>AT25237 WP_013792246.1 NC_015556:c3379566-3378736 [Pseudomonas fulva 12-X]
MPTGERIRFWESPALAGVELLQARYIKQRFTPHVHEGFVFTVIEHGAQRFRHRGADHLAPVGSMVLINPDEVHTGSSAHE
QGWLYRAFYPAPAQVNGVLDELGLAHRGLPSFAASVLQDVELHRAFGQLHRLLDSDAGVLHQQTAWRETLLMLFQRHAGV
RQAAAAGLEPRAVSLAKELLAARLGEPPSLEELATAVNLSPFHFARVFRRATGLPPHAWLQQRRLEQARALLRDGCAPLS
VALQLGFADQSHLTRQFKQVYGVGPGEYRKACHRRP
MPTGERIRFWESPALAGVELLQARYIKQRFTPHVHEGFVFTVIEHGAQRFRHRGADHLAPVGSMVLINPDEVHTGSSAHE
QGWLYRAFYPAPAQVNGVLDELGLAHRGLPSFAASVLQDVELHRAFGQLHRLLDSDAGVLHQQTAWRETLLMLFQRHAGV
RQAAAAGLEPRAVSLAKELLAARLGEPPSLEELATAVNLSPFHFARVFRRATGLPPHAWLQQRRLEQARALLRDGCAPLS
VALQLGFADQSHLTRQFKQVYGVGPGEYRKACHRRP
Download Length: 831 bp
>AT25237 NC_015556:c3379566-3378736 [Pseudomonas fulva 12-X]
ATGCCCACCGGCGAGCGCATCCGCTTCTGGGAAAGCCCCGCCCTGGCCGGCGTGGAGCTGCTGCAGGCGCGCTACATCAA
GCAACGCTTCACCCCGCACGTACACGAAGGTTTCGTGTTCACCGTGATCGAGCATGGCGCCCAGCGCTTTCGCCACCGTG
GCGCGGATCACCTGGCGCCGGTCGGCAGCATGGTGCTGATCAATCCGGACGAGGTGCACACCGGCTCGTCGGCCCACGAG
CAGGGTTGGTTGTACCGCGCCTTCTACCCGGCGCCGGCCCAGGTCAATGGCGTGCTCGACGAACTGGGCCTGGCGCACCG
CGGCCTGCCGTCGTTCGCCGCCAGCGTGCTGCAGGACGTCGAACTGCATCGGGCCTTCGGCCAGTTGCACCGCCTGCTCG
ACAGTGACGCCGGCGTGCTGCACCAGCAGACGGCATGGCGCGAGACATTGCTGATGCTGTTCCAGCGTCATGCCGGGGTC
AGGCAGGCGGCTGCCGCCGGTCTGGAGCCGCGGGCGGTGAGCCTGGCCAAGGAGCTGCTGGCCGCGCGCCTGGGCGAGCC
GCCATCGCTGGAAGAACTGGCCACCGCGGTGAACCTCTCGCCGTTCCATTTCGCCCGGGTGTTTCGCCGCGCCACCGGCC
TGCCGCCCCACGCCTGGTTGCAGCAACGCCGGTTGGAGCAGGCGCGGGCGCTGCTGCGTGACGGCTGTGCGCCGCTGAGC
GTGGCGCTGCAACTGGGCTTCGCCGACCAAAGCCACCTGACGCGACAGTTCAAGCAGGTGTATGGCGTGGGGCCCGGTGA
ATACCGCAAGGCTTGCCATCGCCGCCCGTAG
ATGCCCACCGGCGAGCGCATCCGCTTCTGGGAAAGCCCCGCCCTGGCCGGCGTGGAGCTGCTGCAGGCGCGCTACATCAA
GCAACGCTTCACCCCGCACGTACACGAAGGTTTCGTGTTCACCGTGATCGAGCATGGCGCCCAGCGCTTTCGCCACCGTG
GCGCGGATCACCTGGCGCCGGTCGGCAGCATGGTGCTGATCAATCCGGACGAGGTGCACACCGGCTCGTCGGCCCACGAG
CAGGGTTGGTTGTACCGCGCCTTCTACCCGGCGCCGGCCCAGGTCAATGGCGTGCTCGACGAACTGGGCCTGGCGCACCG
CGGCCTGCCGTCGTTCGCCGCCAGCGTGCTGCAGGACGTCGAACTGCATCGGGCCTTCGGCCAGTTGCACCGCCTGCTCG
ACAGTGACGCCGGCGTGCTGCACCAGCAGACGGCATGGCGCGAGACATTGCTGATGCTGTTCCAGCGTCATGCCGGGGTC
AGGCAGGCGGCTGCCGCCGGTCTGGAGCCGCGGGCGGTGAGCCTGGCCAAGGAGCTGCTGGCCGCGCGCCTGGGCGAGCC
GCCATCGCTGGAAGAACTGGCCACCGCGGTGAACCTCTCGCCGTTCCATTTCGCCCGGGTGTTTCGCCGCGCCACCGGCC
TGCCGCCCCACGCCTGGTTGCAGCAACGCCGGTTGGAGCAGGCGCGGGCGCTGCTGCGTGACGGCTGTGCGCCGCTGAGC
GTGGCGCTGCAACTGGGCTTCGCCGACCAAAGCCACCTGACGCGACAGTTCAAGCAGGTGTATGGCGTGGGGCCCGGTGA
ATACCGCAAGGCTTGCCATCGCCGCCCGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|