Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2605881..2606022 | Replicon | chromosome |
| Accession | NZ_CP101591 | ||
| Organism | Cronobacter dublinensis strain CFSA A14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2605884..2605987 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2605881..2606022 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMY27_RS12455 (NMY27_12445) | 2602452..2603891 | + | 1440 | WP_275875733.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NMY27_RS12460 (NMY27_12450) | 2604002..2604241 | + | 240 | WP_007698851.1 | YebV family protein | - |
| NMY27_RS12465 (NMY27_12455) | 2604352..2604543 | + | 192 | WP_007714097.1 | YebW family protein | - |
| NMY27_RS12470 (NMY27_12460) | 2604544..2605188 | - | 645 | WP_105639566.1 | metallophosphoesterase | - |
| NMY27_RS12475 (NMY27_12465) | 2605534..2605626 | - | 93 | WP_209019718.1 | KPN_01571 family protein | - |
| - | 2605881..2606022 | + | 142 | - | - | Antitoxin |
| - | 2605884..2605987 | - | 104 | - | - | Toxin |
| NMY27_RS12480 (NMY27_12470) | 2606126..2606464 | - | 339 | WP_007698868.1 | YebY family protein | - |
| NMY27_RS12485 (NMY27_12475) | 2606479..2607348 | - | 870 | WP_275875734.1 | copper homeostasis membrane protein CopD | - |
| NMY27_RS12490 (NMY27_12480) | 2607353..2607727 | - | 375 | WP_275875735.1 | CopC domain-containing protein YobA | - |
| NMY27_RS12495 (NMY27_12485) | 2607874..2608104 | + | 231 | WP_007734209.1 | DNA polymerase III subunit theta | - |
| NMY27_RS12500 (NMY27_12490) | 2608180..2608842 | + | 663 | WP_007734207.1 | exodeoxyribonuclease X | - |
| NMY27_RS12505 (NMY27_12495) | 2608839..2610902 | - | 2064 | WP_105739088.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T252348 NZ_CP101591:c2605987-2605884 [Cronobacter dublinensis]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 142 bp
>AT252348 NZ_CP101591:2605881-2606022 [Cronobacter dublinensis]
GATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
GATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
