Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 890412..890998 Replicon plasmid pla_2
Accession NZ_CP101526
Organism Burkholderia arboris strain MEC_B345

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag NLX30_RS37700 Protein ID WP_256087419.1
Coordinates 890412..890795 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag NLX30_RS37705 Protein ID WP_174993891.1
Coordinates 890792..890998 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NLX30_RS37690 (NLX30_37620) 886732..888387 - 1656 WP_256087417.1 tail fiber protein -
NLX30_RS37695 (NLX30_37625) 889438..890013 + 576 WP_256087418.1 hypothetical protein -
NLX30_RS37700 (NLX30_37630) 890412..890795 - 384 WP_256087419.1 PIN domain-containing protein Toxin
NLX30_RS37705 (NLX30_37635) 890792..890998 - 207 WP_174993891.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
NLX30_RS37710 (NLX30_37640) 891443..893311 + 1869 WP_256087825.1 RNA polymerase sigma factor RpoD -
NLX30_RS37715 (NLX30_37645) 893710..894201 - 492 Protein_709 ISNCY family transposase -
NLX30_RS37720 (NLX30_37650) 895033..895728 + 696 WP_155627346.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..1260712 1260712


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-114)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14345.67 Da        Isoelectric Point: 7.2933

>T252202 WP_256087419.1 NZ_CP101526:c890795-890412 [Burkholderia arboris]
MSVLVDTSVWVEHFRRPLPALIQLLRIDNVLTHPLVILELTCGTPPEPRARTLGDLALLRQTRLATSGEVADWIERERLY
GRGCGAVDCTLLASVLLTPSTRLWTRDRRLTQLAEQFGVHYVPPDLH

Download         Length: 384 bp

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7367.45 Da        Isoelectric Point: 6.2465

>AT252202 WP_174993891.1 NZ_CP101526:c890998-890792 [Burkholderia arboris]
MRTTVTVDDTLYARALELAEPGMPPADLFRAALETFVRVQAGQRLAALGGRAPDMADVPRRAPEVTSR

Download         Length: 207 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References