Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 136473..136975 Replicon chromosome
Accession NZ_CP101416
Organism Pseudanabaena sp. Chao 1811

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NMG48_RS00580 Protein ID WP_271253547.1
Coordinates 136721..136975 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag NMG48_RS00575 Protein ID WP_271253546.1
Coordinates 136473..136724 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NMG48_RS00545 132367..132828 + 462 WP_271253540.1 hypothetical protein -
NMG48_RS00550 132955..133209 + 255 WP_271253541.1 hypothetical protein -
NMG48_RS00555 133254..134660 + 1407 WP_271253542.1 GUN4 domain-containing protein -
NMG48_RS00560 134990..135232 + 243 WP_271253543.1 hypothetical protein -
NMG48_RS00565 135229..135636 + 408 WP_271253544.1 putative toxin-antitoxin system toxin component, PIN family -
NMG48_RS00570 135665..136429 + 765 WP_271253545.1 ABC transporter ATP-binding protein -
NMG48_RS00575 136473..136724 + 252 WP_271253546.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NMG48_RS00580 136721..136975 + 255 WP_271253547.1 Txe/YoeB family addiction module toxin Toxin
NMG48_RS00585 137012..138064 + 1053 WP_271253548.1 DUF3326 domain-containing protein -
NMG48_RS00590 138201..138818 + 618 WP_271253549.1 hypothetical protein -
NMG48_RS00595 138907..139944 - 1038 WP_271253550.1 aromatic ring-hydroxylating dioxygenase subunit alpha -
NMG48_RS00600 140248..140442 + 195 WP_009629301.1 50S ribosomal protein L33 -
NMG48_RS00605 140481..140708 + 228 WP_126386092.1 30S ribosomal protein S18 -
NMG48_RS00610 140794..141765 - 972 WP_271253551.1 histone deacetylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10177.62 Da        Isoelectric Point: 8.3827

>T252135 WP_271253547.1 NZ_CP101416:136721-136975 [Pseudanabaena sp. Chao 1811]
MTIIFSDDAWEDYLYWQRTDPKILKRINTLIKEIQRTPYEGIGKPEALKHGFSGYWSRRITDEHRIIYKAETDSLLIAQL
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9422.67 Da        Isoelectric Point: 5.0642

>AT252135 WP_271253546.1 NZ_CP101416:136473-136724 [Pseudanabaena sp. Chao 1811]
MNAVTYTYVRNNLAKTLEKVCDDHDPVIVTRQNQNSVVIMSLEDYEALAETAYLLRSPQNAQRLIRAIADLESGKGKQRE
LVE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References