Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-StbC |
| Location | 270091..270770 | Replicon | chromosome |
| Accession | NC_015458 | ||
| Organism | Pusillimonas sp. T7-7 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | F4GVV3 |
| Locus tag | PT7_RS01195 | Protein ID | WP_013741334.1 |
| Coordinates | 270345..270770 (+) | Length | 142 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | F4GVV2 |
| Locus tag | PT7_RS01190 | Protein ID | WP_013741333.1 |
| Coordinates | 270091..270348 (+) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 243482..391685 | 148203 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 142 a.a. Molecular weight: 15402.71 Da Isoelectric Point: 4.8723
>T25207 WP_013741334.1 NC_015458:270345-270770 [Pusillimonas sp. T7-7]
MIVLDTNVISALWKVESSSSVLTWIDAQAVETLYLSAITMVELRYGLAAMPKGKRRTIYQERMEQEVLPVFAGRVLAFDL
DVSRTYADLMARARAQGNAIGKADGYIAATAAAHNLIVATRDTSPFEAAGLEVINPWEVSP
MIVLDTNVISALWKVESSSSVLTWIDAQAVETLYLSAITMVELRYGLAAMPKGKRRTIYQERMEQEVLPVFAGRVLAFDL
DVSRTYADLMARARAQGNAIGKADGYIAATAAAHNLIVATRDTSPFEAAGLEVINPWEVSP
Download Length: 426 bp
>T25207 NC_015458:270345-270770 [Pusillimonas sp. T7-7]
ATGATCGTTCTCGATACCAACGTCATTTCCGCGTTGTGGAAGGTCGAGTCCAGTTCGAGCGTGCTCACCTGGATTGACGC
CCAGGCTGTCGAAACGCTCTATCTGTCCGCGATCACCATGGTTGAGCTGCGTTATGGTCTTGCAGCGATGCCCAAGGGCA
AGCGCCGCACGATCTATCAGGAACGGATGGAGCAAGAAGTTTTGCCGGTCTTCGCAGGCCGCGTGCTGGCATTCGATTTG
GACGTGTCCAGAACCTATGCTGACTTGATGGCGCGGGCGAGGGCGCAAGGCAACGCTATCGGCAAGGCGGATGGCTACAT
TGCGGCCACCGCCGCTGCGCACAACCTGATCGTGGCCACCCGAGACACAAGTCCCTTCGAAGCCGCAGGACTTGAGGTCA
TCAATCCGTGGGAAGTATCACCATAA
ATGATCGTTCTCGATACCAACGTCATTTCCGCGTTGTGGAAGGTCGAGTCCAGTTCGAGCGTGCTCACCTGGATTGACGC
CCAGGCTGTCGAAACGCTCTATCTGTCCGCGATCACCATGGTTGAGCTGCGTTATGGTCTTGCAGCGATGCCCAAGGGCA
AGCGCCGCACGATCTATCAGGAACGGATGGAGCAAGAAGTTTTGCCGGTCTTCGCAGGCCGCGTGCTGGCATTCGATTTG
GACGTGTCCAGAACCTATGCTGACTTGATGGCGCGGGCGAGGGCGCAAGGCAACGCTATCGGCAAGGCGGATGGCTACAT
TGCGGCCACCGCCGCTGCGCACAACCTGATCGTGGCCACCCGAGACACAAGTCCCTTCGAAGCCGCAGGACTTGAGGTCA
TCAATCCGTGGGAAGTATCACCATAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9482.86 Da Isoelectric Point: 7.4066
>AT25207 WP_013741333.1 NC_015458:270091-270348 [Pusillimonas sp. T7-7]
MANVTVRNLPDEVHRALRVRAAHHGHSIEAEIREILEIAARPPKRIKLGSLLASIAREAGGLTDAEAERLNELRDKTPAE
PMRFE
MANVTVRNLPDEVHRALRVRAAHHGHSIEAEIREILEIAARPPKRIKLGSLLASIAREAGGLTDAEAERLNELRDKTPAE
PMRFE
Download Length: 258 bp
>AT25207 NC_015458:270091-270348 [Pusillimonas sp. T7-7]
ATGGCGAACGTTACCGTAAGAAATCTACCCGATGAGGTGCATCGCGCCCTTCGCGTGCGGGCAGCCCATCATGGCCACAG
CATCGAGGCGGAAATTCGAGAAATCCTCGAAATTGCAGCCCGACCGCCCAAGCGTATCAAACTCGGTTCGCTGCTGGCGT
CCATCGCCCGCGAGGCGGGCGGGCTGACCGATGCCGAAGCCGAGCGCTTGAACGAGCTGCGCGACAAAACGCCTGCCGAG
CCGATGAGGTTTGAATGA
ATGGCGAACGTTACCGTAAGAAATCTACCCGATGAGGTGCATCGCGCCCTTCGCGTGCGGGCAGCCCATCATGGCCACAG
CATCGAGGCGGAAATTCGAGAAATCCTCGAAATTGCAGCCCGACCGCCCAAGCGTATCAAACTCGGTTCGCTGCTGGCGT
CCATCGCCCGCGAGGCGGGCGGGCTGACCGATGCCGAAGCCGAGCGCTTGAACGAGCTGCGCGACAAAACGCCTGCCGAG
CCGATGAGGTTTGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|