Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 4137255..4137831 Replicon chromosome
Accession NZ_CP101376
Organism Salmonella enterica strain SC2016091

Toxin (Protein)


Gene name shpA Uniprot ID M7RG88
Locus tag NMU34_RS20320 Protein ID WP_001131963.1
Coordinates 4137544..4137831 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID B5R9R5
Locus tag NMU34_RS20315 Protein ID WP_000063142.1
Coordinates 4137255..4137557 (-) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NMU34_RS20300 (4133765) 4133765..4135915 + 2151 WP_000379927.1 pyruvate/proton symporter BtsT -
NMU34_RS20305 (4136010) 4136010..4136213 + 204 WP_000460616.1 YbdD/YjiX family protein -
NMU34_RS20310 (4136224) 4136224..4137180 + 957 WP_000187839.1 GTPase -
NMU34_RS20315 (4137255) 4137255..4137557 - 303 WP_000063142.1 BrnA antitoxin family protein Antitoxin
NMU34_RS20320 (4137544) 4137544..4137831 - 288 WP_001131963.1 BrnT family toxin Toxin
NMU34_RS20325 (4138100) 4138100..4139014 - 915 WP_000290512.1 restriction endonuclease -
NMU34_RS20330 (4139212) 4139212..4142721 + 3510 WP_001043484.1 type I restriction-modification system endonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(7-88)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(37-93)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11294.80 Da        Isoelectric Point: 9.5894

>T252021 WP_001131963.1 NZ_CP101376:c4137831-4137544 [Salmonella enterica]
MPMEFEWDANKAKSNLRKHGVRFEDAVLVFDDPRHLSRQERYENGEYRWQTLGLVHGIVVILVAHSVRFESGFEVIRIIS
ARKADRKERNRYEHG

Download         Length: 288 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11373.96 Da        Isoelectric Point: 10.1293

>AT252021 WP_000063142.1 NZ_CP101376:c4137557-4137255 [Salmonella enterica]
MSMVKHKRGNASALSAQHEAELKALAKKSDDEIDYSDIPASEDGQWSEAVRGKFFRPLKTQASVRIDADVMEWLKRPGKG
YQTRLNAILREAMLREQNKK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7VD7

Antitoxin

Source ID Structure
PDB 7VD7
AlphaFold DB A0A4D6PB01

References