Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-DnaT |
Location | 52442..52964 | Replicon | plasmid pSC2014107-mcr-62k |
Accession | NZ_CP101366 | ||
Organism | Salmonella enterica strain SC2014107 |
Toxin (Protein)
Gene name | relE | Uniprot ID | U9YLU1 |
Locus tag | NM059_RS24180 | Protein ID | WP_000638823.1 |
Coordinates | 52442..52723 (-) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | U9Y7J1 |
Locus tag | NM059_RS24185 | Protein ID | WP_000121741.1 |
Coordinates | 52713..52964 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NM059_RS24145 (NM059_24140) | 48591..48911 | - | 321 | WP_000362080.1 | VirB3 family type IV secretion system protein | - |
NM059_RS24150 (NM059_24145) | 48982..49272 | - | 291 | WP_000865479.1 | conjugal transfer protein | - |
NM059_RS24155 (NM059_24150) | 49272..49856 | - | 585 | WP_001177113.1 | lytic transglycosylase domain-containing protein | - |
NM059_RS24160 (NM059_24155) | 49877..50275 | - | 399 | WP_001153665.1 | hypothetical protein | - |
NM059_RS24165 (NM059_24160) | 50394..50831 | - | 438 | WP_000539665.1 | type IV pilus biogenesis protein PilM | - |
NM059_RS24170 (NM059_24165) | 50837..52072 | - | 1236 | WP_015059538.1 | TcpQ domain-containing protein | - |
NM059_RS24175 (NM059_24170) | 52075..52374 | - | 300 | WP_000835764.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
NM059_RS24180 (NM059_24175) | 52442..52723 | - | 282 | WP_000638823.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
NM059_RS24185 (NM059_24180) | 52713..52964 | - | 252 | WP_000121741.1 | hypothetical protein | Antitoxin |
NM059_RS24190 (NM059_24185) | 53064..53699 | - | 636 | WP_086722071.1 | hypothetical protein | - |
NM059_RS24195 (NM059_24190) | 53747..54556 | + | 810 | WP_172690499.1 | DUF5710 domain-containing protein | - |
NM059_RS24200 (NM059_24195) | 54779..55003 | - | 225 | WP_000713562.1 | EexN family lipoprotein | - |
NM059_RS24205 (NM059_24200) | 55012..55656 | - | 645 | WP_086722072.1 | type IV secretion system protein | - |
NM059_RS24210 (NM059_24205) | 55662..56657 | - | 996 | WP_001028540.1 | type IV secretion system protein | - |
NM059_RS24215 (NM059_24210) | 56661..56918 | - | 258 | WP_000739144.1 | hypothetical protein | - |
NM059_RS24220 (NM059_24215) | 56915..57217 | - | 303 | WP_001360345.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Mobilizable plasmid | mcr-1.1 | - | 1..62098 | 62098 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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