Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2164211..2164479 | Replicon | chromosome |
| Accession | NZ_CP101310 | ||
| Organism | Escherichia coli strain 99-3311 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2164338..2164441 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2164211..2164479 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK62_RS10680 | 2160764..2161426 | - | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
| NMK62_RS10685 | 2161450..2162106 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NMK62_RS10690 | 2162208..2162438 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NMK62_RS10695 | 2162577..2162951 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| NMK62_RS10700 | 2162955..2163827 | + | 873 | WP_022581423.1 | copper homeostasis membrane protein CopD | - |
| NMK62_RS10705 | 2163840..2164181 | + | 342 | WP_000976475.1 | YebY family protein | - |
| - | 2164211..2164479 | - | 269 | - | - | Antitoxin |
| - | 2164338..2164441 | + | 104 | - | - | Toxin |
| NMK62_RS10710 | 2164576..2165232 | + | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| NMK62_RS10715 | 2165233..2165424 | - | 192 | WP_001313035.1 | YebW family protein | - |
| NMK62_RS10720 | 2165529..2165765 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NMK62_RS10725 | 2165883..2167322 | - | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251888 NZ_CP101310:2164338-2164441 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT251888 NZ_CP101310:c2164479-2164211 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
