Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3124645..3124916 | Replicon | chromosome |
| Accession | NZ_CP101302 | ||
| Organism | Escherichia coli strain 2000-3039 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3124683..3124786 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3124645..3124916 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK59_RS15620 | 3121802..3123241 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NMK59_RS15625 | 3123359..3123595 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NMK59_RS15630 | 3123700..3123891 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NMK59_RS15635 | 3123892..3124548 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3124645..3124916 | + | 272 | - | - | Antitoxin |
| - | 3124683..3124786 | - | 104 | - | - | Toxin |
| NMK59_RS15640 | 3124944..3125285 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NMK59_RS15645 | 3125298..3126170 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NMK59_RS15650 | 3126174..3126548 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| NMK59_RS15655 | 3126687..3126917 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NMK59_RS15660 | 3127019..3127675 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NMK59_RS15665 | 3127699..3128361 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251841 NZ_CP101302:c3124786-3124683 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251841 NZ_CP101302:3124645-3124916 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
