Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2652093..2652364 | Replicon | chromosome |
| Accession | NZ_CP101274 | ||
| Organism | Escherichia coli strain EC21Z-014 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2652131..2652234 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2652093..2652364 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML17_RS12900 | 2649250..2650689 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NML17_RS12905 | 2650807..2651043 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NML17_RS12910 | 2651148..2651339 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NML17_RS12915 | 2651340..2651996 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2652093..2652364 | + | 272 | - | - | Antitoxin |
| - | 2652131..2652234 | - | 104 | - | - | Toxin |
| NML17_RS12920 | 2652392..2652733 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NML17_RS12925 | 2652746..2653618 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| NML17_RS12930 | 2653622..2653996 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NML17_RS12935 | 2654135..2654365 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NML17_RS12940 | 2654467..2655123 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML17_RS12945 | 2655147..2655809 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NML17_RS12950 | 2655806..2656708 | - | 903 | Protein_2533 | prolyl oligopeptidase family serine peptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2656723..2657931 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251766 NZ_CP101274:c2652234-2652131 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251766 NZ_CP101274:2652093-2652364 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
