Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042290..2042561 | Replicon | chromosome |
| Accession | NZ_CP101269 | ||
| Organism | Escherichia coli strain EC21Z-048 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2042420..2042523 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042290..2042561 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML18_RS09930 | 2038845..2039507 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NML18_RS09935 | 2039531..2040187 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML18_RS09940 | 2040289..2040519 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NML18_RS09945 | 2040658..2041032 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NML18_RS09950 | 2041036..2041908 | + | 873 | WP_254837425.1 | copper homeostasis membrane protein CopD | - |
| NML18_RS09955 | 2041921..2042262 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2042290..2042561 | - | 272 | - | - | Antitoxin |
| - | 2042420..2042523 | + | 104 | - | - | Toxin |
| NML18_RS09960 | 2042658..2043314 | + | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| NML18_RS09965 | 2043315..2043506 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NML18_RS09970 | 2043611..2043847 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NML18_RS09975 | 2043965..2045404 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251734 NZ_CP101269:2042420-2042523 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251734 NZ_CP101269:c2042561-2042290 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
