Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2038348..2038619 | Replicon | chromosome |
| Accession | NZ_CP101263 | ||
| Organism | Escherichia coli strain EC21Z-063 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2038478..2038581 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2038348..2038619 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML19_RS09925 | 2034903..2035565 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| NML19_RS09930 | 2035589..2036245 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML19_RS09935 | 2036347..2036577 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NML19_RS09940 | 2036716..2037090 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NML19_RS09945 | 2037094..2037966 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| NML19_RS09950 | 2037979..2038320 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2038348..2038619 | - | 272 | - | - | Antitoxin |
| - | 2038478..2038581 | + | 104 | - | - | Toxin |
| NML19_RS09955 | 2038716..2039372 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| NML19_RS09960 | 2039373..2039564 | - | 192 | WP_001338167.1 | YebW family protein | - |
| NML19_RS09965 | 2039669..2039905 | - | 237 | WP_001338166.1 | YebV family protein | - |
| NML19_RS09970 | 2040023..2041462 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251714 NZ_CP101263:2038478-2038581 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251714 NZ_CP101263:c2038619-2038348 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
