Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3415198..3415816 Replicon chromosome
Accession NZ_CP101240
Organism Escherichia coli strain EC21Z-101

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag NML23_RS16610 Protein ID WP_001291435.1
Coordinates 3415598..3415816 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag NML23_RS16605 Protein ID WP_000344800.1
Coordinates 3415198..3415572 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NML23_RS16595 (3410287) 3410287..3411480 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
NML23_RS16600 (3411503) 3411503..3414652 + 3150 WP_001132469.1 efflux RND transporter permease AcrB -
NML23_RS16605 (3415198) 3415198..3415572 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
NML23_RS16610 (3415598) 3415598..3415816 + 219 WP_001291435.1 HHA domain-containing protein Toxin
NML23_RS16615 (3415988) 3415988..3416539 + 552 WP_000102568.1 maltose O-acetyltransferase -
NML23_RS16620 (3416655) 3416655..3417125 + 471 WP_000136192.1 YlaC family protein -
NML23_RS16625 (3417289) 3417289..3418839 + 1551 WP_001372022.1 cyclic-guanylate-specific phosphodiesterase PdeB -
NML23_RS16630 (3418881) 3418881..3419234 - 354 WP_000878140.1 DUF1428 domain-containing protein -
NML23_RS16640 (3419613) 3419613..3419924 + 312 WP_000409911.1 MGMT family protein -
NML23_RS16645 (3419955) 3419955..3420527 - 573 WP_000779831.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T251611 WP_001291435.1 NZ_CP101240:3415598-3415816 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT251611 WP_000344800.1 NZ_CP101240:3415198-3415572 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References