Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955046..1955317 | Replicon | chromosome |
| Accession | NZ_CP101240 | ||
| Organism | Escherichia coli strain EC21Z-101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955176..1955279 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955046..1955317 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML23_RS09335 | 1951601..1952263 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NML23_RS09340 | 1952287..1952943 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML23_RS09345 | 1953045..1953275 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NML23_RS09350 | 1953414..1953788 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NML23_RS09355 | 1953792..1954664 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NML23_RS09360 | 1954677..1955018 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1955046..1955317 | - | 272 | - | - | Antitoxin |
| - | 1955176..1955279 | + | 104 | - | - | Toxin |
| NML23_RS09365 | 1955414..1956070 | + | 657 | WP_254825244.1 | protein-serine/threonine phosphatase | - |
| NML23_RS09370 | 1956071..1956262 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NML23_RS09375 | 1956367..1956603 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NML23_RS09380 | 1956721..1958160 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251606 NZ_CP101240:1955176-1955279 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251606 NZ_CP101240:c1955317-1955046 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
