Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1863518..1863789 | Replicon | chromosome |
| Accession | NZ_CP101233 | ||
| Organism | Escherichia coli strain EC21Z-137 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1863648..1863751 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1863518..1863789 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML24_RS08960 | 1860073..1860735 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NML24_RS08965 | 1860759..1861415 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML24_RS08970 | 1861517..1861747 | - | 231 | WP_212403383.1 | DNA polymerase III subunit theta | - |
| NML24_RS08975 | 1861886..1862260 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| NML24_RS08980 | 1862264..1863136 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| NML24_RS08985 | 1863149..1863490 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1863518..1863789 | - | 272 | - | - | Antitoxin |
| - | 1863648..1863751 | + | 104 | - | - | Toxin |
| NML24_RS08990 | 1863886..1864542 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| NML24_RS08995 | 1864543..1864734 | - | 192 | WP_001313035.1 | YebW family protein | - |
| NML24_RS09000 | 1864839..1865075 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NML24_RS09005 | 1865193..1866632 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251582 NZ_CP101233:1863648-1863751 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251582 NZ_CP101233:c1863789-1863518 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
