Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2706076..2706347 | Replicon | chromosome |
| Accession | NZ_CP101222 | ||
| Organism | Escherichia coli strain EC21Z-144 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2706114..2706217 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2706076..2706347 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML25_RS13005 | 2703233..2704672 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NML25_RS13010 | 2704790..2705026 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NML25_RS13015 | 2705131..2705322 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NML25_RS13020 | 2705323..2705979 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2706076..2706347 | + | 272 | - | - | Antitoxin |
| - | 2706114..2706217 | - | 104 | - | - | Toxin |
| NML25_RS13025 | 2706375..2706716 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NML25_RS13030 | 2706729..2707601 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NML25_RS13035 | 2707605..2707979 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NML25_RS13040 | 2708118..2708348 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NML25_RS13045 | 2708450..2709106 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML25_RS13050 | 2709130..2709792 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2703227..2713657 | 10430 | |
| - | inside | Prophage | - | - | 2705323..2714480 | 9157 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251553 NZ_CP101222:c2706217-2706114 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251553 NZ_CP101222:2706076-2706347 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
