Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2221636..2221907 | Replicon | chromosome |
| Accession | NZ_CP101197 | ||
| Organism | Escherichia coli strain EC21Z-151 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2221766..2221869 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2221636..2221907 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NML27_RS10615 | 2218191..2218853 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NML27_RS10620 | 2218877..2219533 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NML27_RS10625 | 2219635..2219865 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NML27_RS10630 | 2220004..2220378 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NML27_RS10635 | 2220382..2221254 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NML27_RS10640 | 2221267..2221608 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2221636..2221907 | - | 272 | - | - | Antitoxin |
| - | 2221766..2221869 | + | 104 | - | - | Toxin |
| NML27_RS10645 | 2222004..2222660 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| NML27_RS10650 | 2222661..2222852 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NML27_RS10655 | 2222957..2223193 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NML27_RS10660 | 2223311..2224750 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2214326..2237747 | 23421 | |
| - | inside | Prophage | - | - | 2184331..2237747 | 53416 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251477 NZ_CP101197:2221766-2221869 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT251477 NZ_CP101197:c2221907-2221636 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
