Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047400..2047548 | Replicon | chromosome |
| Accession | NZ_CP100764 | ||
| Organism | Serratia plymuthica strain SASK2000 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047444..2047540 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047400..2047548 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLX81_RS09715 (NLX81_09715) | 2042619..2043044 | + | 426 | WP_013812462.1 | TraR/DksA C4-type zinc finger protein | - |
| NLX81_RS09720 (NLX81_09720) | 2043213..2044166 | + | 954 | WP_013812463.1 | prolyl aminopeptidase | - |
| NLX81_RS09725 (NLX81_09725) | 2044195..2044425 | - | 231 | WP_254754989.1 | DNA polymerase III subunit theta | - |
| NLX81_RS09730 (NLX81_09730) | 2044800..2045318 | + | 519 | WP_013815088.1 | non-heme ferritin | - |
| NLX81_RS09735 (NLX81_09735) | 2045623..2046006 | + | 384 | WP_013812465.1 | CopC domain-containing protein YobA | - |
| NLX81_RS09740 (NLX81_09740) | 2046010..2046891 | + | 882 | WP_013812466.1 | copper homeostasis membrane protein CopD | - |
| NLX81_RS09745 (NLX81_09745) | 2046961..2047302 | + | 342 | WP_013812467.1 | YebY family protein | - |
| - | 2047400..2047548 | - | 149 | - | - | Antitoxin |
| - | 2047444..2047540 | + | 97 | - | - | Toxin |
| NLX81_RS09750 (NLX81_09750) | 2048118..2048822 | + | 705 | WP_013812468.1 | hypothetical protein | - |
| NLX81_RS09755 (NLX81_09755) | 2049096..2049836 | - | 741 | WP_013812470.1 | alpha/beta hydrolase | - |
| NLX81_RS09760 (NLX81_09760) | 2050262..2050615 | + | 354 | WP_013812471.1 | hypothetical protein | - |
| NLX81_RS09765 (NLX81_09765) | 2050889..2051428 | + | 540 | WP_013812472.1 | cysteine hydrolase family protein | - |
| NLX81_RS09770 (NLX81_09770) | 2051544..2051894 | + | 351 | WP_041416043.1 | DUF4377 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T251381 NZ_CP100764:2047444-2047540 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT251381 NZ_CP100764:c2047548-2047400 [Serratia plymuthica]
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
