Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2730823..2730963 | Replicon | chromosome |
| Accession | NZ_CP100753 | ||
| Organism | Serratia marcescens strain SASK1000 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2730823..2730919 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2730823..2730963 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLX77_RS13040 (NLX77_13040) | 2728269..2729336 | + | 1068 | WP_015377486.1 | RecT family recombinase | - |
| NLX77_RS13045 (NLX77_13045) | 2729412..2729687 | + | 276 | WP_015377485.1 | excisionase | - |
| NLX77_RS13050 (NLX77_13050) | 2729662..2730744 | + | 1083 | WP_118892166.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2730823..2730919 | - | 97 | - | - | Toxin |
| - | 2730823..2730963 | + | 141 | - | - | Antitoxin |
| NLX77_RS13055 (NLX77_13055) | 2731061..2731402 | - | 342 | WP_004940890.1 | YebY family protein | - |
| NLX77_RS13060 (NLX77_13060) | 2731472..2732353 | - | 882 | WP_254519737.1 | copper homeostasis membrane protein CopD | - |
| NLX77_RS13065 (NLX77_13065) | 2732356..2732739 | - | 384 | WP_240437446.1 | CopC domain-containing protein YobA | - |
| NLX77_RS13070 (NLX77_13070) | 2733064..2733582 | - | 519 | WP_015377481.1 | non-heme ferritin | - |
| NLX77_RS13075 (NLX77_13075) | 2733927..2734157 | + | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| NLX77_RS13080 (NLX77_13080) | 2734189..2735142 | - | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| NLX77_RS13085 (NLX77_13085) | 2735299..2735694 | - | 396 | WP_085336340.1 | RidA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2687037..2738980 | 51943 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T251361 NZ_CP100753:c2730919-2730823 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT251361 NZ_CP100753:2730823-2730963 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
