251176

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 838330..838990 Replicon chromosome
Accession NZ_CP100715
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474

Toxin (Protein)


Gene name cptA Uniprot ID Q57K70
Locus tag NL730_RS04040 Protein ID WP_000244756.1
Coordinates 838577..838990 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S5MU13
Locus tag NL730_RS04035 Protein ID WP_000351186.1
Coordinates 838330..838596 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NL730_RS04015 (834258) 834258..835691 - 1434 WP_001230141.1 6-phospho-beta-glucosidase BglA -
NL730_RS04020 (835850) 835850..836161 + 312 WP_001182976.1 N(4)-acetylcytidine aminohydrolase -
NL730_RS04025 (836325) 836325..836984 + 660 WP_000250289.1 hemolysin III family protein -
NL730_RS04030 (837100) 837100..838080 - 981 WP_000874172.1 tRNA-modifying protein YgfZ -
NL730_RS04035 (838330) 838330..838596 + 267 WP_000351186.1 FAD assembly factor SdhE Antitoxin
NL730_RS04040 (838577) 838577..838990 + 414 WP_000244756.1 protein YgfX Toxin
NL730_RS04045 (839043) 839043..839564 - 522 WP_001055885.1 flavodoxin FldB -
NL730_RS04050 (839677) 839677..840573 + 897 WP_000434302.1 site-specific tyrosine recombinase XerD -
NL730_RS04055 (840597) 840597..841310 + 714 WP_000745625.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
NL730_RS04060 (841316) 841316..843049 + 1734 WP_000813394.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 16183.15 Da        Isoelectric Point: 10.7537

>T251176 WP_000244756.1 NZ_CP100715:838577-838990 [Salmonella enterica subsp. enterica serovar Typhimurium]
VVLWQSDLRVSWRAQWISLLIHGLVAAVILLMPWPLSYTPLWMILLSLVVFDCVRSQRRINTCQGEIKLLMDGRLRWQGQ
DWTLLRPPWLLKSGMVLRLRAESGRHQHLWLAADSMEEAEWRELRRILLQQPISGQH

Download         Length: 414 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10550.05 Da        Isoelectric Point: 6.0783

>AT251176 WP_000351186.1 NZ_CP100715:838330-838596 [Salmonella enterica subsp. enterica serovar Typhimurium]
MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3Z1E9V5

Antitoxin

Source ID Structure
AlphaFold DB A0A5I0YWH4

References