Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | tacAT/DUF1778(antitoxin) |
| Location | 204926..205686 | Replicon | chromosome |
| Accession | NZ_CP100702 | ||
| Organism | Salmonella enterica subsp. enterica serovar Thompson strain R18.0872 | ||
Toxin (Protein)
| Gene name | tacT | Uniprot ID | Q57IH1 |
| Locus tag | NL734_RS00955 | Protein ID | WP_000533909.1 |
| Coordinates | 205201..205686 (+) | Length | 162 a.a. |
Antitoxin (Protein)
| Gene name | tacA | Uniprot ID | M7RHS4 |
| Locus tag | NL734_RS00950 | Protein ID | WP_000965886.1 |
| Coordinates | 204926..205213 (+) | Length | 96 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL734_RS00930 (200331) | 200331..201242 | + | 912 | WP_001168551.1 | glycine--tRNA ligase subunit alpha | - |
| NL734_RS00935 (201252) | 201252..203321 | + | 2070 | WP_001291736.1 | glycine--tRNA ligase subunit beta | - |
| NL734_RS00940 (203711) | 203711..204109 | + | 399 | Protein_186 | IS3 family transposase | - |
| NL734_RS00945 (204281) | 204281..204748 | + | 468 | WP_000702452.1 | GNAT family N-acetyltransferase | - |
| NL734_RS00950 (204926) | 204926..205213 | + | 288 | WP_000965886.1 | DUF1778 domain-containing protein | Antitoxin |
| NL734_RS00955 (205201) | 205201..205686 | + | 486 | WP_000533909.1 | GNAT family N-acetyltransferase | Toxin |
| NL734_RS00960 (206060) | 206060..206599 | - | 540 | WP_000047140.1 | copper-binding periplasmic metallochaperone CueP | - |
| NL734_RS00965 (206772) | 206772..206984 | - | 213 | WP_000014594.1 | RNA chaperone/antiterminator CspA | - |
| NL734_RS00970 (207272) | 207272..207562 | - | 291 | WP_000455790.1 | HTH-type transcriptional regulator | - |
| NL734_RS00975 (208001) | 208001..208711 | + | 711 | WP_000190524.1 | DUF3053 domain-containing protein | - |
| NL734_RS00980 (208761) | 208761..209735 | - | 975 | WP_017465308.1 | glyoxylate/hydroxypyruvate reductase GhrB | - |
| NL734_RS00985 (209954) | 209954..210616 | - | 663 | WP_000747548.1 | OmpA family lipoprotein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 162 a.a. Molecular weight: 17703.41 Da Isoelectric Point: 9.8719
>T251106 WP_000533909.1 NZ_CP100702:205201-205686 [Salmonella enterica subsp. enterica serovar Thompson]
VGRVTAPEPLSAFHQVAEFVSGEAVLDDWLKQKGLKNQALGAARTFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNM
PDPIPVIILARLAVDLSFHGKGLGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKSSQTQQRTLFLRLP
Q
VGRVTAPEPLSAFHQVAEFVSGEAVLDDWLKQKGLKNQALGAARTFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNM
PDPIPVIILARLAVDLSFHGKGLGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKSSQTQQRTLFLRLP
Q
Download Length: 486 bp
Antitoxin
Download Length: 96 a.a. Molecular weight: 10950.60 Da Isoelectric Point: 4.6811
>AT251106 WP_000965886.1 NZ_CP100702:204926-205213 [Salmonella enterica subsp. enterica serovar Thompson]
MLYKGCLMKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILETACQAAEKVILDRRVFNFNDEQYEEFINLLDAPVADD
PVIEKLLARKPQWDV
MLYKGCLMKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILETACQAAEKVILDRRVFNFNDEQYEEFINLLDAPVADD
PVIEKLLARKPQWDV
Download Length: 288 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| PDB | 7F36 | |
| PDB | 7AK8 | |
| PDB | 5FVJ |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3V2JDX2 |