Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020588..2020733 | Replicon | chromosome |
| Accession | NZ_CP100689 | ||
| Organism | Salmonella enterica subsp. enterica serovar Newport strain R18.0287 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020628..2020731 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020588..2020733 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGU70_RS09695 | 2017014..2017712 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| FGU70_RS09700 | 2017736..2018392 | - | 657 | WP_000100254.1 | carbon-nitrogen hydrolase family protein | - |
| FGU70_RS09705 | 2018500..2018730 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| FGU70_RS09710 | 2018868..2019242 | + | 375 | WP_000168395.1 | CopC domain-containing protein YobA | - |
| FGU70_RS09715 | 2019243..2020118 | + | 876 | WP_000979686.1 | copper homeostasis membrane protein CopD | - |
| FGU70_RS09720 | 2020135..2020488 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2020588..2020733 | - | 146 | - | - | Antitoxin |
| - | 2020628..2020731 | + | 104 | - | - | Toxin |
| FGU70_RS09725 | 2020861..2021940 | - | 1080 | WP_000087646.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FGU70_RS09730 | 2021970..2022965 | - | 996 | Protein_1900 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| FGU70_RS09735 | 2023113..2023361 | + | 249 | Protein_1901 | glycoside hydrolase family 19 protein | - |
| FGU70_RS09740 | 2023358..2023892 | + | 535 | Protein_1902 | DUF2514 domain-containing protein | - |
| FGU70_RS09745 | 2024149..2024316 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| FGU70_RS09750 | 2024381..2024569 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| FGU70_RS09755 | 2024624..2024884 | + | 261 | Protein_1905 | DUF1441 family protein | - |
| FGU70_RS09760 | 2025099..2025443 | + | 345 | Protein_1906 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2014926..2060423 | 45497 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T251022 NZ_CP100689:2020628-2020731 [Salmonella enterica subsp. enterica serovar Newport]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT251022 NZ_CP100689:c2020733-2020588 [Salmonella enterica subsp. enterica serovar Newport]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
