Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3129265..3129354 Replicon chromosome
Accession NC_015061
Organism Rahnella sp. Y9602

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3129265..3129354 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3129265..3129354 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RAHAQ_RS14245 3126873..3127274 - 402 Protein_2840 portal capsid protein Q -
RAHAQ_RS26225 3127272..3127509 + 238 Protein_2841 phage late control D family protein -
RAHAQ_RS14250 3127590..3128003 - 414 WP_013576171.1 GNAT family N-acetyltransferase -
RAHAQ_RS26230 3128151..3128371 + 221 Protein_2843 DNA-binding transcriptional regulator -
RAHAQ_RS14260 3128413..3128778 - 366 WP_013576172.1 hypothetical protein -
RAHAQ_RS26530 3129034..3129201 + 168 Protein_2845 integrase -
- 3129265..3129354 - 90 - - Toxin
RAHAQ_RS14265 3129510..3129845 - 336 WP_013576173.1 YebY family protein -
RAHAQ_RS14270 3129896..3130780 - 885 WP_013576174.1 copper homeostasis membrane protein CopD -
RAHAQ_RS14275 3130784..3131167 - 384 WP_013576175.1 copper homeostasis periplasmic binding protein CopC -
RAHAQ_RS14280 3131309..3131815 - 507 WP_013576176.1 non-heme ferritin -
RAHAQ_RS14285 3132222..3132452 + 231 WP_013576177.1 DNA polymerase III subunit theta -
RAHAQ_RS14290 3132472..3133428 - 957 WP_013576178.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T25099 NC_015061:c3129354-3129265 [Rahnella sp. Y9602]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 90 bp

>AT25099 NC_015061:3129265-3129354 [Rahnella sp. Y9602]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References