Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 449480..450123 Replicon chromosome
Accession NZ_CP100670
Organism Salmonella enterica subsp. enterica serovar Mbandaka strain R17.0904

Toxin (Protein)


Gene name vagD Uniprot ID -
Locus tag NL713_RS02140 Protein ID WP_017441191.1
Coordinates 449480..449896 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID B5F3H9
Locus tag NL713_RS02145 Protein ID WP_001261294.1
Coordinates 449893..450123 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NL713_RS02120 (444517) 444517..445650 + 1134 WP_017441192.1 amidohydrolase/deacetylase family metallohydrolase -
NL713_RS02125 (445634) 445634..446752 + 1119 WP_001139194.1 DgaE family pyridoxal phosphate-dependent ammonia lyase -
NL713_RS02130 (446749) 446749..447489 + 741 WP_023229489.1 KDGP aldolase family protein -
NL713_RS02135 (447506) 447506..449419 + 1914 WP_023242878.1 BglG family transcription antiterminator -
NL713_RS02140 (449480) 449480..449896 - 417 WP_017441191.1 type II toxin-antitoxin system VapC family toxin Toxin
NL713_RS02145 (449893) 449893..450123 - 231 WP_001261294.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
NL713_RS02150 (450290) 450290..450754 - 465 WP_017441190.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
NL713_RS02155 (450971) 450971..453109 - 2139 WP_000187821.1 anaerobic ribonucleoside-triphosphate reductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-129)

Antitoxin

SpoVT-AbrB domain

(7-44)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15163.55 Da        Isoelectric Point: 8.1381

>T250943 WP_017441191.1 NZ_CP100670:c449896-449480 [Salmonella enterica subsp. enterica serovar Mbandaka]
MSKTYMLDTCICSFIMREQPEAVLKRLEQAVLRRHRIVVSAITYAEMRFGCTGKKASPRHAQLVDAFCSRLDAVLAWDRA
AVDATTEIRAVLAAVGTPIGSNDAAIAGHAIASGAILVTNNVREFERVPGLQYEDWVK

Download         Length: 417 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8878.90 Da        Isoelectric Point: 4.6677

>AT250943 WP_001261294.1 NZ_CP100670:c450123-449893 [Salmonella enterica subsp. enterica serovar Mbandaka]
MRTVSVFKNGNNRAIRLPRDLDFDGVNELEIFREGDTIILRPARPSWGSFRHEEKASPDFLTEREDIISDEGRFEL

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A3V4SIC2

References