Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916746..1916891 | Replicon | chromosome |
| Accession | NZ_CP100601 | ||
| Organism | Klebsiella pneumoniae strain WX17388 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916782..1916884 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916746..1916891 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLI98_RS09135 | 1911876..1913936 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NLI98_RS09140 | 1913940..1914599 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NLI98_RS09145 | 1914678..1914908 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NLI98_RS09150 | 1915021..1915395 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NLI98_RS09155 | 1915399..1916268 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NLI98_RS09160 | 1916285..1916623 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1916746..1916891 | - | 146 | - | - | Antitoxin |
| - | 1916782..1916884 | + | 103 | - | - | Toxin |
| NLI98_RS09165 | 1917259..1917402 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NLI98_RS09170 | 1917507..1918475 | - | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| NLI98_RS09175 | 1918632..1919285 | + | 654 | Protein_1789 | protein-serine/threonine phosphatase | - |
| NLI98_RS09180 | 1919282..1919473 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NLI98_RS09185 | 1919571..1919810 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NLI98_RS09190 | 1919926..1921359 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250876 NZ_CP100601:1916782-1916884 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250876 NZ_CP100601:c1916891-1916746 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
