Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 4100220..4100815 Replicon chromosome
Accession NZ_CP100544
Organism Escherichia coli strain LH09-a

Toxin (Protein)


Gene name chpB Uniprot ID U9Y4M4
Locus tag NLZ06_RS19640 Protein ID WP_000239579.1
Coordinates 4100220..4100570 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID A0A4D0VVQ9
Locus tag NLZ06_RS19645 Protein ID WP_001223207.1
Coordinates 4100564..4100815 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NLZ06_RS19620 (4095496) 4095496..4096518 - 1023 WP_001296689.1 ABC transporter permease -
NLZ06_RS19625 (4096532) 4096532..4098034 - 1503 WP_000205795.1 sugar ABC transporter ATP-binding protein -
NLZ06_RS19630 (4098344) 4098344..4099300 - 957 WP_000265933.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
NLZ06_RS19635 (4099610) 4099610..4100140 + 531 WP_000055072.1 inorganic diphosphatase -
NLZ06_RS19640 (4100220) 4100220..4100570 - 351 WP_000239579.1 endoribonuclease toxin ChpB Toxin
NLZ06_RS19645 (4100564) 4100564..4100815 - 252 WP_001223207.1 type II toxin-antitoxin system antitoxin ChpS Antitoxin
NLZ06_RS19650 (4101028) 4101028..4101369 - 342 WP_001219160.1 gamma-glutamylcyclotransferase -
NLZ06_RS19655 (4101372) 4101372..4105151 - 3780 WP_000060927.1 autotransporter assembly complex protein TamB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

Antitoxin PemI-like

(1-83)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12511.45 Da        Isoelectric Point: 5.6219

>T250837 WP_000239579.1 NZ_CP100544:c4100570-4100220 [Escherichia coli]
MVKKSEFERGDIVLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEGDVHGVVLV
NQVRMMDLRARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9285.61 Da        Isoelectric Point: 4.4201

>AT250837 WP_001223207.1 NZ_CP100544:c4100815-4100564 [Escherichia coli]
MRITIKRWGNSAGMVIPNILMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCDMNAAELSEQDVWGKSTPAGD
EIW

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y8A8

Antitoxin

Source ID Structure
AlphaFold DB A0A4D0VVQ9

References