Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974734..1975005 | Replicon | chromosome |
| Accession | NZ_CP100544 | ||
| Organism | Escherichia coli strain LH09-a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974864..1974967 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974734..1975005 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ06_RS09485 | 1971289..1971951 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NLZ06_RS09490 | 1971975..1972631 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NLZ06_RS09495 | 1972733..1972963 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NLZ06_RS09500 | 1973102..1973476 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| NLZ06_RS09505 | 1973480..1974352 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NLZ06_RS09510 | 1974365..1974706 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1974734..1975005 | - | 272 | - | - | Antitoxin |
| - | 1974864..1974967 | + | 104 | - | - | Toxin |
| NLZ06_RS09515 | 1975102..1975758 | + | 657 | WP_096002028.1 | protein-serine/threonine phosphatase | - |
| NLZ06_RS09520 | 1975759..1975950 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NLZ06_RS09525 | 1976055..1976291 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NLZ06_RS09530 | 1976409..1977848 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250829 NZ_CP100544:1974864-1974967 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT250829 NZ_CP100544:c1975005-1974734 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
