Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1837620..1837765 | Replicon | chromosome |
| Accession | NZ_CP100542 | ||
| Organism | Klebsiella pneumoniae strain LH09-d | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1837656..1837758 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1837620..1837765 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ07_RS08955 | 1832750..1834810 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NLZ07_RS08960 | 1834814..1835473 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| NLZ07_RS08965 | 1835552..1835782 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NLZ07_RS08970 | 1835895..1836269 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NLZ07_RS08975 | 1836273..1837142 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NLZ07_RS08980 | 1837159..1837497 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1837620..1837765 | - | 146 | - | - | Antitoxin |
| - | 1837656..1837758 | + | 103 | - | - | Toxin |
| NLZ07_RS08985 | 1838134..1838277 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NLZ07_RS08990 | 1838382..1839350 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NLZ07_RS08995 | 1839507..1840160 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| NLZ07_RS09000 | 1840157..1840348 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NLZ07_RS09005 | 1840446..1840685 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NLZ07_RS09010 | 1840801..1842234 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250812 NZ_CP100542:1837656-1837758 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250812 NZ_CP100542:c1837765-1837620 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
