Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2056763..2057034 | Replicon | chromosome |
| Accession | NZ_CP100530 | ||
| Organism | Escherichia coli strain LH10-b-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2056893..2056996 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2056763..2057034 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ08_RS09865 | 2053319..2053981 | - | 663 | WP_023157707.1 | exodeoxyribonuclease X | - |
| NLZ08_RS09870 | 2054005..2054661 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NLZ08_RS09875 | 2054763..2054993 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NLZ08_RS09880 | 2055132..2055506 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NLZ08_RS09885 | 2055510..2056382 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| NLZ08_RS09890 | 2056395..2056736 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2056763..2057034 | - | 272 | - | - | Antitoxin |
| - | 2056893..2056996 | + | 104 | - | - | Toxin |
| NLZ08_RS09895 | 2057131..2057787 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NLZ08_RS09900 | 2057788..2057979 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NLZ08_RS09905 | 2058084..2058320 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NLZ08_RS09910 | 2058438..2059877 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250784 NZ_CP100530:2056893-2056996 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT250784 NZ_CP100530:c2057034-2056763 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
