Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1931266..1931537 | Replicon | chromosome |
| Accession | NZ_CP100525 | ||
| Organism | Escherichia coli strain LH13-b | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1931396..1931499 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1931266..1931537 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ09_RS09310 | 1927821..1928483 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| NLZ09_RS09315 | 1928507..1929163 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NLZ09_RS09320 | 1929265..1929495 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NLZ09_RS09325 | 1929634..1930008 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NLZ09_RS09330 | 1930012..1930884 | + | 873 | WP_136699173.1 | copper homeostasis membrane protein CopD | - |
| NLZ09_RS09335 | 1930897..1931238 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1931266..1931537 | - | 272 | - | - | Antitoxin |
| - | 1931396..1931499 | + | 104 | - | - | Toxin |
| NLZ09_RS09340 | 1931634..1932290 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| NLZ09_RS09345 | 1932291..1932482 | - | 192 | WP_001338167.1 | YebW family protein | - |
| NLZ09_RS09350 | 1932587..1932823 | - | 237 | WP_001338166.1 | YebV family protein | - |
| NLZ09_RS09355 | 1932941..1934380 | - | 1440 | WP_136699175.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250758 NZ_CP100525:1931396-1931499 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT250758 NZ_CP100525:c1931537-1931266 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
