Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3431050..3431195 | Replicon | chromosome |
| Accession | NZ_CP100515 | ||
| Organism | Klebsiella pneumoniae strain LH35-d | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3431057..3431159 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3431050..3431195 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ11_RS16855 (NLZ11_16855) | 3426583..3428016 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NLZ11_RS16860 (NLZ11_16860) | 3428132..3428371 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NLZ11_RS16865 (NLZ11_16865) | 3428469..3428660 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NLZ11_RS16870 (NLZ11_16870) | 3428657..3429310 | - | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| NLZ11_RS16875 (NLZ11_16875) | 3429467..3430435 | + | 969 | WP_195770191.1 | VirK/YbjX family protein | - |
| NLZ11_RS16880 (NLZ11_16880) | 3430540..3430683 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3431050..3431195 | + | 146 | - | - | Antitoxin |
| - | 3431057..3431159 | - | 103 | - | - | Toxin |
| NLZ11_RS16885 (NLZ11_16885) | 3431318..3431656 | - | 339 | WP_016529031.1 | YebY family protein | - |
| NLZ11_RS16890 (NLZ11_16890) | 3431673..3432542 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NLZ11_RS16895 (NLZ11_16895) | 3432546..3432920 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NLZ11_RS16900 (NLZ11_16900) | 3433033..3433263 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NLZ11_RS16905 (NLZ11_16905) | 3433342..3434001 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NLZ11_RS16910 (NLZ11_16910) | 3434005..3436065 | - | 2061 | WP_159307789.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250729 NZ_CP100515:c3431159-3431057 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250729 NZ_CP100515:3431050-3431195 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
