Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3430310..3430455 | Replicon | chromosome |
| Accession | NZ_CP100511 | ||
| Organism | Klebsiella pneumoniae strain LH50-a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3430317..3430419 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3430310..3430455 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ12_RS16830 (NLZ12_16830) | 3425843..3427276 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NLZ12_RS16835 (NLZ12_16835) | 3427392..3427631 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NLZ12_RS16840 (NLZ12_16840) | 3427729..3427920 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NLZ12_RS16845 (NLZ12_16845) | 3427917..3428570 | - | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| NLZ12_RS16850 (NLZ12_16850) | 3428727..3429695 | + | 969 | WP_195770191.1 | VirK/YbjX family protein | - |
| NLZ12_RS16855 (NLZ12_16855) | 3429800..3429943 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3430310..3430455 | + | 146 | - | - | Antitoxin |
| - | 3430317..3430419 | - | 103 | - | - | Toxin |
| NLZ12_RS16860 (NLZ12_16860) | 3430578..3430916 | - | 339 | WP_016529031.1 | YebY family protein | - |
| NLZ12_RS16865 (NLZ12_16865) | 3430933..3431802 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NLZ12_RS16870 (NLZ12_16870) | 3431806..3432180 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NLZ12_RS16875 (NLZ12_16875) | 3432293..3432523 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NLZ12_RS16880 (NLZ12_16880) | 3432602..3433261 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NLZ12_RS16885 (NLZ12_16885) | 3433265..3435325 | - | 2061 | WP_159307789.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250713 NZ_CP100511:c3430419-3430317 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250713 NZ_CP100511:3430310-3430455 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
