Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2991878..2992149 | Replicon | chromosome |
| Accession | NZ_CP100500 | ||
| Organism | Escherichia coli strain LH50-c | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2991916..2992019 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2991878..2992149 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ13_RS14745 | 2989035..2990474 | + | 1440 | WP_001695829.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NLZ13_RS14750 | 2990592..2990828 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NLZ13_RS14755 | 2990933..2991124 | + | 192 | WP_001313035.1 | YebW family protein | - |
| NLZ13_RS14760 | 2991125..2991781 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 2991878..2992149 | + | 272 | - | - | Antitoxin |
| - | 2991916..2992019 | - | 104 | - | - | Toxin |
| NLZ13_RS14765 | 2992177..2992518 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NLZ13_RS14770 | 2992531..2993403 | - | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| NLZ13_RS14775 | 2993407..2993781 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NLZ13_RS14780 | 2993920..2994150 | + | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| NLZ13_RS14785 | 2994252..2994908 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NLZ13_RS14790 | 2994932..2995594 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250679 NZ_CP100500:c2992019-2991916 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT250679 NZ_CP100500:2991878-2992149 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
