Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2181592..2181760 | Replicon | chromosome |
| Accession | NZ_CP100497 | ||
| Organism | Klebsiella michiganensis strain LH71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2181650..2181753 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2181592..2181760 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ14_RS10345 (NLZ14_10345) | 2176719..2178779 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| NLZ14_RS10350 (NLZ14_10350) | 2178786..2179445 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| NLZ14_RS10355 (NLZ14_10355) | 2179524..2179754 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| NLZ14_RS10360 (NLZ14_10360) | 2179890..2180264 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| NLZ14_RS10365 (NLZ14_10365) | 2180269..2181138 | + | 870 | WP_254539957.1 | copper homeostasis membrane protein CopD | - |
| NLZ14_RS10370 (NLZ14_10370) | 2181155..2181493 | + | 339 | WP_254539958.1 | YebY family protein | - |
| - | 2181592..2181760 | - | 169 | - | - | Antitoxin |
| - | 2181650..2181753 | + | 104 | - | - | Toxin |
| NLZ14_RS10375 (NLZ14_10375) | 2181878..2182837 | - | 960 | WP_088168007.1 | spore coat protein U domain-containing protein | - |
| NLZ14_RS10380 (NLZ14_10380) | 2182852..2185182 | - | 2331 | WP_200914192.1 | fimbria/pilus outer membrane usher protein | - |
| NLZ14_RS10385 (NLZ14_10385) | 2185185..2185949 | - | 765 | WP_049102470.1 | fimbria/pilus periplasmic chaperone | - |
| NLZ14_RS10390 (NLZ14_10390) | 2185968..2186486 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250656 NZ_CP100497:2181650-2181753 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT250656 NZ_CP100497:c2181760-2181592 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
