Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2724938..2725105 | Replicon | chromosome |
| Accession | NZ_CP100494 | ||
| Organism | Atlantibacter subterranea strain LH84-a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2724941..2725045 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2724938..2725105 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ15_RS12885 (NLZ15_12885) | 2721685..2723121 | + | 1437 | WP_254486361.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NLZ15_RS12890 (NLZ15_12890) | 2723236..2723475 | + | 240 | WP_125291932.1 | YebV family protein | - |
| NLZ15_RS12895 (NLZ15_12895) | 2723583..2723774 | + | 192 | WP_125291931.1 | YebW family protein | - |
| NLZ15_RS12900 (NLZ15_12900) | 2723775..2724419 | - | 645 | WP_151604603.1 | metallophosphoesterase | - |
| - | 2724938..2725105 | + | 168 | - | - | Antitoxin |
| - | 2724941..2725045 | - | 105 | - | - | Toxin |
| NLZ15_RS12905 (NLZ15_12905) | 2725187..2725525 | - | 339 | WP_125291929.1 | YebY family protein | - |
| NLZ15_RS12910 (NLZ15_12910) | 2725551..2726426 | - | 876 | WP_254486362.1 | copper homeostasis membrane protein CopD | - |
| NLZ15_RS12915 (NLZ15_12915) | 2726428..2726802 | - | 375 | WP_144132602.1 | CopC domain-containing protein YobA | - |
| NLZ15_RS12920 (NLZ15_12920) | 2726953..2727183 | + | 231 | WP_125291926.1 | DNA polymerase III subunit theta | - |
| NLZ15_RS12925 (NLZ15_12925) | 2727299..2728024 | + | 726 | WP_254486363.1 | carbon-nitrogen hydrolase family protein | - |
| NLZ15_RS12930 (NLZ15_12930) | 2728048..2728716 | + | 669 | WP_125291924.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T250643 NZ_CP100494:c2725045-2724941 [Atlantibacter subterranea]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT250643 NZ_CP100494:2724938-2725105 [Atlantibacter subterranea]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
CAAAAAAA
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
CAAAAAAA
